| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2792 |
|---|
| Symbol | |
|---|
| ID | 6206233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 3565482 |
|---|
| End bp | 3567719 |
|---|
| Gene Length | 2238 bp |
|---|
| Protein Length | 745 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641692454 |
|---|
| Product | primosomal protein N' |
|---|
| Protein accession | YP_001819673 |
|---|
| Protein GI | 182414607 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
|---|
| TIGRFAM ID | [TIGR00595] primosomal protein N' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.240357 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGTCG GCGTCCATCC GCTCGCGGGG TTCGACAAGC TCCTGCACTA CAAAGTCCCC
GACCCGATGC GGGACGCCGT GCAGGTGGGC TCGCTCGTGC GCGTGCCGGT GCTGCGAACG
ATGCGACTCG GAATCGTGGG CGAGATCGGC GTGCCGAAAG ATTTTCCCGT CGAGAAACTC
AAGGCCGTCG TCGAGGTGCT GCATCCGTTT CCCGCGCTCA CCCCAGAGCT GCTGCAACTC
GCGCGCTGGA TGGCCGGCTA CTACGCGTGC GGCGTGGACA GCGTGATCGA GACGATGCTG
CCGGCGGCGG TGCGCCGCGG CGCGACCGTC AAACACGAGA AATCGCTCGC GCTGGTGCGG
CGGCTTACGC CGGACGAGCT CACCGTGCTG GAGAAGAAAG CGCCGCAACA GGCGCGACTC
TATCGGCTGC TCGCGCAGCA GTTCAGGCCG CAGCTGAAAT CGCTCGTGCT GTCGCGGCTC
GGCGTCACCG CGGCGGTGGC GACGGCACTG ATCAAGCGCG GGTTCGTGCG CGAGGAGCTG
CGGCGCGTTG AACGCGTGGC GTATGCGGAC GATTTCGCGC ACGGCGAACT CGTCGCCGCG
CAGCCGCACA CGCTGAATCC CGAGCAGGCG GCGGTCGTGG CGGATCTCGA GTCACGGCTC
GGCGAACAGA AGTTCGGCGT GGCGCTGCTG CACGGGGTGA CCGGATCGGG GAAGACGGAG
GTTTACCTGC GGGGGATCGA CACGACGCTG AAAGCCGGCG GCGGCGTGCT GTTTCTCGTG
CCGGAGGTGG CACTCACGCC GCAGACCGTC GCGCGGCTGC GCTCACGGCT CGAGGCGATC
GCGCCCGGGC ATCGTTGCGT CGTGTGGCAC AGTCACCTGA GCGACGGTGA ACGGTTCGAC
GGCTGGCTCG CGCTCGCGAC CGGCGAGGCG CGAATCGTGG TGGGCGCGCG GTCCGCGGTG
TTCGCGCCGG TCGCGAACTT GCGGCTGATC ATCGTCGATG AGGAGCACGA GCCGGCCTAT
AAACAGGACG AAACGCCGCG GTATCACGGC CGCGACGTGG CGGTGATGCG GGCGAAGCTG
ACCGGCGCGT TCTGCGTGCT CGGCTCGGCC ACGCCCTCGC TCGAAAGCTT CGCCAACGCA
CTCGCCGGCA AATATCGATT GCTCACGCTG ACGCAGCGCG TCGACAACCG GCAGCTGCCT
AACATCGACG TGGTCGATCT CCGGATCGAG GCGATGAAGC ACCGCAGCCT GACGGCGCTT
TCGGACAAGT TGGTGAACGC GATGCAGGCC CGCTTCGAGC GGCGCGAGCA GACGATCCTG
TTCATCAATC GCCGTGGCTA TTCCTCGTCG ATGCTGTGCA CGAAATGCGG GCACGTGGAG
GAGTGTCCGC ATTGTAGCAT CGCGATGACG TATCACCGCG CCGACGAGAT GCTACGCTGC
CATTTGTGTG GCGAACAGAA GGCGGCGCCG GCGCGGTGTC CGCAATGCGG GGCGCCGGAC
ATCCGCTGGC GTGGACTCGG CACGCAGCGG GTGGAGGAGG CGGTGCGACG GGTGCTGCCG
CGGGCGCGCA TCGAGCGGAT GGACACGGAT GCGATGGCGA AGAAGAACCG GTTCCGCGAG
GTGCTGAGCC AGTTTCGCGC CGGCAAAATC GACGTGCTGG TGGGCACGCA GATGATCGGC
AAGGGGCTCG ATTTCCCGAA CGTGACGCTG GTCGGCTTGA TCGATGCGGA CATGTCGATG
CACATTCCGG ATTTTCGGGC GAACGAACGG ACCTTCCAGC TGCTGGTGCA GGTTGCGGGG
CGCGCGGGCC GCGGCGATCG CGCGGGCGAC GTGGTGGTGC AGACGTTCAC GCCGCAGGCG
GAGGCGATCC AGTTTTCACG GCGGGCGGAT TTCGCGGGAT TCGCCGAATC GGAGCTGAAG
CTGCGGAAGG AATTTCACTA TCCGCCTTAC CGGCATCTGA TCCATCACCT GTTTCGCGGG
CCGAACCCGG AGAAACTGAA ATTTTTTGCG GAGCAGTGGG CACGGCTCGT GGAAAAGGAA
CTCGGGCAGA TCGTGGAGTT GCGTGGGCCG TCAGCCTCGC CGATCGAAAA GATCAAGGAT
GAGTACCGCT GGCAGCTGTG GTATTTCACG CACGCGGTGA TCAAGGTGGT GCCGGCGCTG
GCGAAGCTGC GCGCGGGCTT CGCGTGGCCC GACGACATCA CGCAGGTGCT CGATGTCGAT
CCGGTGAACT TGATGTAG
|
|---|
| Protein sequence | MIVGVHPLAG FDKLLHYKVP DPMRDAVQVG SLVRVPVLRT MRLGIVGEIG VPKDFPVEKL
KAVVEVLHPF PALTPELLQL ARWMAGYYAC GVDSVIETML PAAVRRGATV KHEKSLALVR
RLTPDELTVL EKKAPQQARL YRLLAQQFRP QLKSLVLSRL GVTAAVATAL IKRGFVREEL
RRVERVAYAD DFAHGELVAA QPHTLNPEQA AVVADLESRL GEQKFGVALL HGVTGSGKTE
VYLRGIDTTL KAGGGVLFLV PEVALTPQTV ARLRSRLEAI APGHRCVVWH SHLSDGERFD
GWLALATGEA RIVVGARSAV FAPVANLRLI IVDEEHEPAY KQDETPRYHG RDVAVMRAKL
TGAFCVLGSA TPSLESFANA LAGKYRLLTL TQRVDNRQLP NIDVVDLRIE AMKHRSLTAL
SDKLVNAMQA RFERREQTIL FINRRGYSSS MLCTKCGHVE ECPHCSIAMT YHRADEMLRC
HLCGEQKAAP ARCPQCGAPD IRWRGLGTQR VEEAVRRVLP RARIERMDTD AMAKKNRFRE
VLSQFRAGKI DVLVGTQMIG KGLDFPNVTL VGLIDADMSM HIPDFRANER TFQLLVQVAG
RAGRGDRAGD VVVQTFTPQA EAIQFSRRAD FAGFAESELK LRKEFHYPPY RHLIHHLFRG
PNPEKLKFFA EQWARLVEKE LGQIVELRGP SASPIEKIKD EYRWQLWYFT HAVIKVVPAL
AKLRAGFAWP DDITQVLDVD PVNLM
|
|---|
| |