Gene Oter_2788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOter_2788 
Symbol 
ID6204198 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOpitutus terrae PB90-1 
KingdomBacteria 
Replicon accessionNC_010571 
Strand
Start bp3561741 
End bp3563279 
Gene Length1539 bp 
Protein Length512 aa 
Translation table11 
GC content64% 
IMG OID641692450 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001819669 
Protein GI182414603 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.786059 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.240357 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAGG ATCTGGAATT GCTTCGCCGC TACGCCGAGA CCGGCTCCGA AGCAGCCTTC 
GCGGAATTGG TGCGGCGGCG AATCGGGCTG GTCTACTCCG TCGCGCTGCG GCACACGCGG
GACCCACACC TTGCGCAGGA TGCCACCCAG ACTGTGTTCG CGGACCTAGC ACGCAAGGCG
GCCACCCTGT CGAAGCAGAC GGTGCTCATT GGCTGGTTCC ATCGCAGTGC GCATTACGCG
GCGATGAACA TCATGCGCGC CGAGTGGAGC CGCTCGGCGC GCGAACGGGA GGTGCAGCAC
ATGCACAGAG TCTTCGCGGG CGAGCAACCG CCTGAAGCTT GGGAGAATGC CCGGCCTCTC
TTGGACGAGG TGTTGAGCGA ATTGGAAGCG AAAGATCGCG ATGCAATCCT GCTCCGGTAT
CTCGATGGGT GTGGTTTTGC GGAAGTGGGA GCTAGGCTTG GGCTCAGCGA GAATGCGGCG
CGGATGCGCG TGGACCGTGC GCTCGACAAG CTGCAGGCGG GATTCGCCCG CCGGCGTCTG
ACTTCGTCCG CCGCGGTGCT GGGAACGGTG CTGGCGCAGC AGGCGCTCGC GGATGTGCCC
GCCGGTTTGG CCTCCGTGGT GGCGCACGCG GCGCTCTCCT CGGCCGCAGC CGGCACCGCG
CCCGCGCTCA CGTTCGTTCA AATTATGACC ACAACCAAGA TGATCGCGAG TGTCGGTGGC
TTGGCCCTGA CCATGGCGAT AGTTGGCGCG GGTTACCAGA TGCACGTCCG CCGTGCCGCC
GAGACGGAAC TCAACCGCGT TACGCAGGAG CATGGCGCAT TGAACACGAA ACGGGAAACG
CTCGAACGAG CCGCCGCGGA CGCGGAGAGG CATGTGGCAG AACTAAAGCA AGCGGCGGCA
GAGGCCGAGA CCAAGCGCAT CGCGCAAGCC ACCGCCGCTC AGCAGCTGGC CGCACGACAT
GCCAACTGGA ATCCAACCGC GGAAGGCAAG GCGCTGCTCG AACGCTATCC TGAGCTGAAG
AGTTGGGTGC AGACGGTTGC AGACGCCGGA TTCGAGTCGA GGTTTGGCGG GTTTTGTCGA
TCGCTGGGAC TGAATCCGGA GCAGGTCGCA CAGCTCCGGA TGATTTACCG GGAGTTCTCG
TCGATGGGCG CGACATTCAG GGGTGAGATG GTGTCGCTAC CGGCCGGCAG GGGCATATCG
TGGCAGGAAA GCGACCGGGC CTTGCGCGCA CTGCTTGGCG ACGAGAACGC CACGAAGTTC
CGCGAATACG GTCGAGGGAA TCTCGACCGC AGGCTCGCGA CGCAGCTCGC TAAGGCACTC
TGCTTTAGCG ATGCACCGCT GACTCCTGCG CAATCGGCCT ACGTGGTTCA GCTCATCGGT
GAAAGCCGCG GCCGTGACGC CAAAGGCGCT CCGGGTCCTG TCGACTGGGA TCGTGTGGTG
GCCGAAGCGA AAGACCGGCT GTCGACCGAC CAGCTTGCGG CGCTGCAAGC GATGCGGCCG
GATGCGGCGG TGGATGCGTT GTTTTTCCAA CCGGACTGA
 
Protein sequence
MIEDLELLRR YAETGSEAAF AELVRRRIGL VYSVALRHTR DPHLAQDATQ TVFADLARKA 
ATLSKQTVLI GWFHRSAHYA AMNIMRAEWS RSAREREVQH MHRVFAGEQP PEAWENARPL
LDEVLSELEA KDRDAILLRY LDGCGFAEVG ARLGLSENAA RMRVDRALDK LQAGFARRRL
TSSAAVLGTV LAQQALADVP AGLASVVAHA ALSSAAAGTA PALTFVQIMT TTKMIASVGG
LALTMAIVGA GYQMHVRRAA ETELNRVTQE HGALNTKRET LERAAADAER HVAELKQAAA
EAETKRIAQA TAAQQLAARH ANWNPTAEGK ALLERYPELK SWVQTVADAG FESRFGGFCR
SLGLNPEQVA QLRMIYREFS SMGATFRGEM VSLPAGRGIS WQESDRALRA LLGDENATKF
REYGRGNLDR RLATQLAKAL CFSDAPLTPA QSAYVVQLIG ESRGRDAKGA PGPVDWDRVV
AEAKDRLSTD QLAALQAMRP DAAVDALFFQ PD