| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2780 |
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| Symbol | |
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| ID | 6206686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 3553036 |
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| End bp | 3554976 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641692442 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_001819661 |
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| Protein GI | 182414595 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.952948 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.727475 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGATT CTTCCGCCGC CACCCCCGCG CGTCTGCTCC CGACCCTCCA GAGCCCGGCC
GACGTCAAAG CCCTCTCCGC TGCGCAACTG CCCCTGTTGG CGGAGGAAAT CCGGCGCGAG
CTGATCGCCG TCACGTCCCG CAACGGCGGG CACATCGGGC CCAATCTTGG CGTCGTCGAA
CTGACGATCG CGCTTCACCG CATTTTCAAC ACGCCCGAAG ATCAACTGGT GTTCGATGTG
GCGCACCAGG GCTACGTGCA CAAGCTGCTC ACCGGCCGCG GCGGCGACTT TTTCCAAAAC
CTGCGCCAGA CCGGCGGAGC GAGCGGCTTT CTCGCGCGGG GGGAAAGCCT CCACGACGCG
TTCGGCGCGG GCCACGCGGG TACCGCCCTG TCGGCCGCGC TCGGCATGGC TACGGCGCGC
GACCTGCGCG GCACCGCCGA ACACGTGATC GCCATCTGCG GCGACGCCGC GTTCACCTGC
GGCATCACGC TGGAAGCGCT GAACAACGTC GTGTCCTCGA CGAAGCGGCT GATCGTGATC
CTCAACGACA ACGAGTGGTC GATCGCCAAG AACGTCGGCG CCATGGCCAA CTATCTGAAC
CGGCTCAGCA CGAACCCGAC GTACAACAAG CTCCACCACG ACGTGGAAGC GTTCTTTACC
AGCTTCCCGG CCGGCGTGGA GATGAACCGG TTCTATCAGA AGTGGAAGCG TGAAACGAAG
GACTTCTTCG TCGAGTCGTC GCTGTTCGAG AAGTTCGGGT TGCGTTATCT CGGCCCGGTG
GACGGCCACA ACTTCGAGGC GCTGGCGAAA AATCTCGAGT TCGCGAAGCA TTGCGACGTG
CCCGTGCTCG TGCACGTGCT GACGAAAAAA GGCAAAGGCC TCGATGCCGC GCTGATTCAC
CCGGAGAAAT TTCATGGCGC CAGTCCGTTT AATCCGCTCA CCGGCGAAAG CACCAAGAGT
ACGTCGGTCA GCGTGGTGCC CAATTACCAG GACGTGCTGG GGCAGGCGCT CGCGCGATTT
GCGCTGGCCG ACACCAAGAT TGTCGGCGTG ACGGCGGCGA TGCCGAGTGG CACCGGGCTC
TCGCACCTCG CGAAAGCGGC GCCGCAGCAG TTCTTCGACG TGGGCATCGC CGAGGAGCAT
GCGGTGCTGT TCGCCGCCGG CATGGCGACG AAGGGCATCA AGCCCGTGTG CGCCATCTAT
TCGACGTTCC TGCAGCGCGC CTACGACCAG ATCATTCACG ACGTCGCGCT GCAGAATTTG
CCCGTGACCT TTTGCCTGGA CCGCGCCGGA TTGTCGCCGA ACGACGGGCC GACGCACCAC
GGGCTCTTCG ATCTCGCGTA TTTACGCTGC GTGCCGAACG CGACGGTCAT GCAGCCCAAG
GACGAGGACG AACTCGTCGA CATGCTGCAC ACCAGCCTGC AGCTGGGCAG CCCGGCGTTT
CTCCGGTATC CGCGCGGCGC GGGTGTCGGC GTCAAGCTCA AGTCCCAACC CGTCAAGCTC
CCGATCGGTC AGGCCGAGGT GCTGCGGCAG GGCTCGAACA TCATGCTGTG GGCGCTCGGA
CCGATGGTGC AGGAGGCGCT CGCTCTCGCC CAGCGGCTCG AGACCGAAGA GAATCTTTCG
GTCGGCGTGG TAAACGCGCG ATTCGTGAAG CCGCTCGACC GCACGCTCCT GCTCAGCCAG
GCCGCCTGCA TTCCCTTGCT CGTGACGATG GAGGATCACG CGGTGACCGG TGGGTTCGGC
AGCGCCGTGC TCGAAACTCT GCAGGAAGCG AACTGCACGA CCGCCGTCGA GCGCATCGGC
TGGCCGGATA AATTTATCGA GCACGGATCG AACGTCACGG TGTTGCGCGA AGCACACGGG
CTGGGCGCCG ATGCGATCTA TCGCCGCGTG CTCGACCGGT GGCGTCACCT GCGCGCCGAA
ACCGTCGCGG CCGACGCGTG A
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| Protein sequence | MNDSSAATPA RLLPTLQSPA DVKALSAAQL PLLAEEIRRE LIAVTSRNGG HIGPNLGVVE
LTIALHRIFN TPEDQLVFDV AHQGYVHKLL TGRGGDFFQN LRQTGGASGF LARGESLHDA
FGAGHAGTAL SAALGMATAR DLRGTAEHVI AICGDAAFTC GITLEALNNV VSSTKRLIVI
LNDNEWSIAK NVGAMANYLN RLSTNPTYNK LHHDVEAFFT SFPAGVEMNR FYQKWKRETK
DFFVESSLFE KFGLRYLGPV DGHNFEALAK NLEFAKHCDV PVLVHVLTKK GKGLDAALIH
PEKFHGASPF NPLTGESTKS TSVSVVPNYQ DVLGQALARF ALADTKIVGV TAAMPSGTGL
SHLAKAAPQQ FFDVGIAEEH AVLFAAGMAT KGIKPVCAIY STFLQRAYDQ IIHDVALQNL
PVTFCLDRAG LSPNDGPTHH GLFDLAYLRC VPNATVMQPK DEDELVDMLH TSLQLGSPAF
LRYPRGAGVG VKLKSQPVKL PIGQAEVLRQ GSNIMLWALG PMVQEALALA QRLETEENLS
VGVVNARFVK PLDRTLLLSQ AACIPLLVTM EDHAVTGGFG SAVLETLQEA NCTTAVERIG
WPDKFIEHGS NVTVLREAHG LGADAIYRRV LDRWRHLRAE TVAADA
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