| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2771 |
|---|
| Symbol | |
|---|
| ID | 6208316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3545630 |
|---|
| End bp | 3546463 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641692432 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001819652 |
|---|
| Protein GI | 182414586 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.538359 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCTC CCGTCATGCG CGGAGAAGTG ATACTGGAAG CCGGCCAGGG TGAGGCTCAC
TACTGGCGTG ATCTGTGGCG CTATCGCGAA CTGCTCGGCT TTCTCGCGTG GCGCGACATC
AAGGTGCGCT ACAAGCAGGC CACGCTGGGC GCGGCGTGGG CGCTCTTCCA GCCGATCGTC
ACGATGGTGA TTTTCACGTT CGTGTTTGGC CGCCTCGCGA AAATGCCCGA CGGCGGCGTG
CCCTACCCGG TGCTCGTGCT CGCCGGACTC CTGCCCTGGC AGCTCTTCTC CGCCTCGCTT
AGTGGCGCCA GCGGCAGCCT CGTGGGCAAC TCGCACCTCA TCTCCAAGGT GTACTTTCCC
CGGCTCGTCA TCCCAATTTC CGCTATCGGT GTCGCGCTCG TGGATTTTGC CATCGTGCTC
GGACTTTTCG TGGTGGTGTC GCTCTGGTTT GGAGTGGTAC CGACGTGGCA CTGGCTGATG
CTGCCGGTCT TCATCGCGCT CACCCTCCTC CTGGCGCTCG GCGCCGGCCT CTGGCTCACC
AGCCTTACGG TGAAGTTCCG GGACTTCCGG TTCATCGTCC CCTTTCTGCT GCAGGTCGGC
GTGTTTGTAT CGCCCGTGGG ATATCGCACC GATCACTTCG CGAACTGGCG TGCGGTGCTG
GCCTTGAATC CGCTGACCGG TGTGATCGAC GGATACCGCT GGTGTTTGCT CGGCGGCAGG
CAAACGCTCG ACCCGCTCGC GCTCGAGTAC GCGGTCATCC TCACCGCGAT CCTGGTCCTC
ACCGGATTGT GGTACTTCCG GCGAACGGAG CGCCAATTCG CCGACATCAT CTGA
|
|---|
| Protein sequence | MNPPVMRGEV ILEAGQGEAH YWRDLWRYRE LLGFLAWRDI KVRYKQATLG AAWALFQPIV
TMVIFTFVFG RLAKMPDGGV PYPVLVLAGL LPWQLFSASL SGASGSLVGN SHLISKVYFP
RLVIPISAIG VALVDFAIVL GLFVVVSLWF GVVPTWHWLM LPVFIALTLL LALGAGLWLT
SLTVKFRDFR FIVPFLLQVG VFVSPVGYRT DHFANWRAVL ALNPLTGVID GYRWCLLGGR
QTLDPLALEY AVILTAILVL TGLWYFRRTE RQFADII
|
|---|
| |