| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2687 |
|---|
| Symbol | |
|---|
| ID | 6206208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 3441013 |
|---|
| End bp | 3442455 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641692347 |
|---|
| Product | protein serine phosphatase with GAF(s) sensor(s) |
|---|
| Protein accession | YP_001819568 |
|---|
| Protein GI | 182414502 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTTCG CTCTCGTCCT CGGCACGCTG CTGGGTGGGT CCGCGATGCT CCTGCCTTTT
TATCGCGCGC GGCGCGCCGC GGCGGCGGCG GAGCAGGGCC GCCAACAGGT GGCACAAGAG
CGGCAGCTCG TCGTGGATTT CATGCATCAC ATGGTCGCCG CGCTGGGCGA GGAAGCGACG
CGCGAGGAGC TGCCGCAGCG GATCGTGCAT GCCGCGATCC TGTGCTCGGG CGCACTGAGC
GCATGCCTGT TCGAGCGCAC GGGCGGCGGA CAGATGCGCA GCGTGGCGGT GGAAGGATTG
TTTCCGCCGC ACCGGCCGCT GCCACCCTCG TTGCGGGAGA AACTCGCCAC GCGGGCGCGG
TTCATCGAGC AGGTGCTGAA AACGGAGACG TTCCCCGACA ACGAGGGCAT CGTGGGCGCC
GTGGTCCAGT CCGGCCAGGG ACAACTCGTG CCGGACGCGG CCGCGGATCC GCGGATCGTA
CGGCACGACG ATCCAGCGCT GAAGGTGCGC TCGGTGATCG CGGTGCCGTT GCGGTTTCGC
GACCGGTTCT TCGGCGTGCT GGCGGCCGCC AACTCCGCGG ATGGGGAGCC GTTCACCGCG
AACGATTTTT CCTTGATGCA GTCGCTGGCC GAGCAAGCCG CGCTCGCGCT GCACAACGCC
GAGTTCCTGA ACCTGCAGAT CGAAAAGCAG CAGCTCGATC TGGATCTCTC GCTCGCCAGC
GGGATCCAGC AGATGCTGCT GCCGCACGAT CTGCCGCTGT TTCGCGGGCT CGACGTGGAC
GCGCGCTATC AGGCGGCGCA GAAGATCAGC GGCGATTTCT ACGATCTGTT GCGCCTGGAC
GAGCAGCGCA TGGGCATCGC GGTGGCGGAC GTTTCGGGCA AAGGGATCCC CGCCTCGCTG
CTCATGGCGA TTTGCCGGAC GAGTCTGCGG CAGATCGCGC CCCGATTCCA GTCGCCCGCC
GCGACGCTGG CGGAGCTGAA TCGCGCGCTG ACGGGCGACA TGCGACCGGG CACGTTCATC
ACGCTGTTGT ATGCGATCGT GGACACCGCG CGCGGTGAGG TGACGGTGGC GCGGGCCGGC
CACGAGCTGC CGTTGGTCGC GCGGCGCGAT CCAGCGACGG GCGTGGCGGG GGGCGAGTTT
ATCGGTTCGG AAGGCATGCC GCTGGGATTG GTGCCGGACG AAGTGTTCGC GAGCGTGATC
GTGGATCGCA CCGTGCCCTT CCGGAACGGC GACGTGCTGG TGCTGTACAC CGACGGTGTC
ACCGAGGCGC CAAACGAGGA GGGGCGGGAA TTCTCCGGCG CTCGGCTGGT CGACGCGGTG
CGTGCGCTGC ACGGCCGCAG CGCGCAGGAG TTGAACGATG GAATTCTTGA ACGCGTGCAG
CGGTTCGCCG GGGCGGCGGC ACAGCGCGAT GATTTGACCC TGGTTACAGT GAAGCGCGCG
TGA
|
|---|
| Protein sequence | MIFALVLGTL LGGSAMLLPF YRARRAAAAA EQGRQQVAQE RQLVVDFMHH MVAALGEEAT
REELPQRIVH AAILCSGALS ACLFERTGGG QMRSVAVEGL FPPHRPLPPS LREKLATRAR
FIEQVLKTET FPDNEGIVGA VVQSGQGQLV PDAAADPRIV RHDDPALKVR SVIAVPLRFR
DRFFGVLAAA NSADGEPFTA NDFSLMQSLA EQAALALHNA EFLNLQIEKQ QLDLDLSLAS
GIQQMLLPHD LPLFRGLDVD ARYQAAQKIS GDFYDLLRLD EQRMGIAVAD VSGKGIPASL
LMAICRTSLR QIAPRFQSPA ATLAELNRAL TGDMRPGTFI TLLYAIVDTA RGEVTVARAG
HELPLVARRD PATGVAGGEF IGSEGMPLGL VPDEVFASVI VDRTVPFRNG DVLVLYTDGV
TEAPNEEGRE FSGARLVDAV RALHGRSAQE LNDGILERVQ RFAGAAAQRD DLTLVTVKRA
|
|---|
| |