Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_2634 |
Symbol | |
ID | 6207747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | + |
Start bp | 3377562 |
End bp | 3378470 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641692294 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001819515 |
Protein GI | 182414449 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.258799 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAATTC TGAAGATCTT CGGCGTCGTC GTGGGCGTCC ACGTCTTTGC CTTGATTCTG ATTTTCGCCA ATCCGGGTTG CAGTTCCGCC AAGCGGCCGA CGCGTGACGC CTCTGAGACC GTGATCGCCA GCGGTGGCGA TACCAGCGCG ATGGTCGCGC CGGTGGCCGC GACCAGCGAG TCGCCGGTCA GCCTCGCGCC GCCGCCCTCG TTCGATCCGA ATGCGCCCGC GACTGCGGTG GTGCGTTTCA CGCCGACGCG TCCCGGCACG CCGACCGCCG CCGCGCTCGA AGCCGCGCCG GTTGCGGACG TCACGCCGGC GACGACGTAC ACCGTCGTGC GCGGCGATAG CCTCTGGACG ATCGCCAAGA AGCACCACAG CTCGGTCGGT GAAATCGCGG CGGCCAACAA TCTCCGCACC AGCGCGACGG TGCGCGTGGG ACAGAAGCTG ATCATCCCGG CCAAGTCGGT CGCGGGGAGC GCGCAGTTCC AGCCAGCGGA AAGCACGCCG GTCGTCGCCG CGACACCGAC GGCGCCGCGG GCTTCGGGCG AAGCAGTCAA GCACATCGTG CGGCCGGGCG AAACGCTCGG CGCCATCGCG CGGAAATATC AGGTGAAGGT CGGCGACATC GCCACCGCGA ACGCCATTTC GGATCCGGCG CGGATCCGGC CCGGCATGGA GTTGACCATC CCGGGCTGGC AGGCGCCGAC GAGCCGCGCG ACGCGCGCGA CGCCGAGCAC TGCCACATCG CGCCCGGCGG CCCAGGAACC CACGGCGACG CCCGCGACCC AACCCGCGAC CACGGAGTCG GTGCCGACGA TCGTCATCCC CGCCCCGGAA CAGGATCTCG ATGCTGGGTT GCGCGACAAG CAAGGCGATG CGCCGGTGAT TCCGGTGGAG GAAAAGTGA
|
Protein sequence | MKILKIFGVV VGVHVFALIL IFANPGCSSA KRPTRDASET VIASGGDTSA MVAPVAATSE SPVSLAPPPS FDPNAPATAV VRFTPTRPGT PTAAALEAAP VADVTPATTY TVVRGDSLWT IAKKHHSSVG EIAAANNLRT SATVRVGQKL IIPAKSVAGS AQFQPAESTP VVAATPTAPR ASGEAVKHIV RPGETLGAIA RKYQVKVGDI ATANAISDPA RIRPGMELTI PGWQAPTSRA TRATPSTATS RPAAQEPTAT PATQPATTES VPTIVIPAPE QDLDAGLRDK QGDAPVIPVE EK
|
| |