| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2439 |
|---|
| Symbol | |
|---|
| ID | 6207080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3140210 |
|---|
| End bp | 3140689 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641692098 |
|---|
| Product | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| Protein accession | YP_001819321 |
|---|
| Protein GI | 182414255 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTTC GCATCGGCCA CGGCTACGAC ATCCACCGGA TCGTCGCCGG CCGGCCGCTC
ATCCTCGGAG GCGTGCGGTT TGAGGTGGAT TTCGGCCTCG AGGGTCACTC CGACGCCGAT
TGCCTCACCC ACGCGATTTG CGACGCGCTG CTAGGCGCCG CCGGTCTGCC GGATATCGGA
CACTTTTTCC CTAACACCGA TCCTGCCTTC AAGAACATCG ATTCGCAGGT GCTGCTGCAG
CGCGTCCGCG CCGAAATCCG CCAACGCGGT TTCGAAATCG TGAACATCGA CGCCACCGTC
ATTGCCGAAA AACCCAAGCT CCAGCCCCGG CTCACGGAGA TGAAGTCGAC GCTGGCGAAA
TCCGCCGGGC TGCTCCCAGA CGAGATCGGC CTCAAAGCCA CCACCAACGA AGGGATCGAC
GACCTCGGCC GCGGGCTCGC GATTGCCGCG CACGCGGTCG CGTTGCTGAA ACGGAGCTAA
|
|---|
| Protein sequence | MNLRIGHGYD IHRIVAGRPL ILGGVRFEVD FGLEGHSDAD CLTHAICDAL LGAAGLPDIG
HFFPNTDPAF KNIDSQVLLQ RVRAEIRQRG FEIVNIDATV IAEKPKLQPR LTEMKSTLAK
SAGLLPDEIG LKATTNEGID DLGRGLAIAA HAVALLKRS
|
|---|
| |