| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2418 |
|---|
| Symbol | |
|---|
| ID | 6205999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3111921 |
|---|
| End bp | 3113678 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641692077 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001819300 |
|---|
| Protein GI | 182414234 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.325054 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGCT TCCGCCCCTA TTTCCACTAC CTGCGGCCGC TGCGCGGGCA GTTGATCTTG
GCGCTGTTCT GCTTGTGCAT CTATTCCGCC GCGAGCGGCT TCGGTCTGCC CACGATGCTG
CAGATCGTAT TCAAGCCGAT CTTCGAGGCC GAGGCCCGCA ACCTCACGGT CATGGAGATT
GCCGGATTGG CCATGATCAT CCCGGCCGTG TTCTTCCTCC GCGGCATCTC GGGCTATTTC
AGCTCCTACC TTTTCCAATT CATCGGCACG CGCGTGCTTG AGGGCATCCG GCTCGATTAT
TTCCGCAAAC TCCAGGTACT GCCGCTGGCC GAACTCCAAA AACACGCGGC CGGTGATTTC
ACCTCGCGCG TGATCAACGA CGCGCAACAG GTCCAGACCG TCATCACCGC GCTCGCCAAC
GACGGCATCA AGCACCCGCT CACGCTGGTC GCCGCGGTCG GTTTCGTGAT CTACGCCGCG
TTCCACAGCA ACGTCGGCAT CGCCGTCCTG TGCCTCGCCA TCGTGCCGCT CTGCGTATTC
CCCATCCGGT TCGTCGCGCG GAAGGTCCTC CGCCGCGCCC ATCAGGCCCA GGCGCAAATC
GGCTCGCTGT CCTCGCAGGT CACCGAAAAC CTGGCCGCCG TGCGCGAGGT GCGCGCCTTC
GGACTCGAAG AGCGCTCCAC GCAGCGTTTT CACGCCACGA GCCGCGAGCT GTTCGCGGCG
CAGCTGAAGA TCGTGAAGTA TGCCCAGGCG CTGAATCCCA TCATCGAGGT GATCTCCGCC
GGCGGCATCG CGCTGACGCT CATCTTCGCC TACGAGAGCG GCGTCACCCT CACGGACCTC
ACCGCGGTCT TGCTGGCGCT CTACATGTGC TACGATCCGG TCAAGAAGCT CGGTTATCTC
AACACCGATC TGAAACGGGG CGCGGCCGCT CTCGACCGGC TCGAGCCGGT CCTTCACGCC
CCCGTGGCCA TCGCCGATCC GGCCACTCCC GTGCCGATCA CCCGGCTCCG CGGCGACATC
GCGTTCGACC ACGTGACATT CGCCTACAAT GGCGGCGAGC CGGCGCTGCG CGATGCTTCG
ATCACCATCC CCGCGGGGAC GGTTTGCGCG CTGGTCGGTC CCAGCGGCGC CGGCAAGACC
ACGTTCGCCA ACCTGGTGCC GCGCTTCTAC GAAGTGGGTG CCGGCCGTGT CACCGTTGAT
GGCCACGACG TGCGCGCGCT CCGGCTCGCG GACCTCCGCC GCAACATCGC GATCGTCTCG
CAGGACCCGG TGCTGTTCAA CGACACCATC TACAACAACC TCTTGCTGGG CCGGCCCGAC
GCCACGCGCG AAGAAGTCGT CGCCGCGGCC GTCGACGCGC ATGCCGACGA ATTCATCCGC
AGCTTTTCCG ACGGCTACGA CTCGACCGTC GGTGAGCGCG GCGCGCTTTT GTCGGGCGGA
CAAAAGCAGC GGCTCGCGCT GGCCCGCGCG TTCCTGCGCA ACGCCCCCAT CCTCATCCTC
GATGAGGCGA CCTCGGCGCT CGATTCGCAG AGCGAGCAGA TGATTCAGGA GGCACTCAAG
AAGCTCGTGG TGGGCAAGAC CGTGCTGATC ATTGCGCATC GGTTTAGTAC GATCCGCGAC
GCGACCATGA TCCTCGTGTT CGACCGCGGC GAGATCGTCG CGTCCGGCGC CCACGCCGAA
CTCTACGCCG GCAACGAACT CTACAAGTCG CTCTACGATC AGCAGAATGT CGGCGCGACG
ATCGGCAACG GGTTGTAG
|
|---|
| Protein sequence | MQRFRPYFHY LRPLRGQLIL ALFCLCIYSA ASGFGLPTML QIVFKPIFEA EARNLTVMEI
AGLAMIIPAV FFLRGISGYF SSYLFQFIGT RVLEGIRLDY FRKLQVLPLA ELQKHAAGDF
TSRVINDAQQ VQTVITALAN DGIKHPLTLV AAVGFVIYAA FHSNVGIAVL CLAIVPLCVF
PIRFVARKVL RRAHQAQAQI GSLSSQVTEN LAAVREVRAF GLEERSTQRF HATSRELFAA
QLKIVKYAQA LNPIIEVISA GGIALTLIFA YESGVTLTDL TAVLLALYMC YDPVKKLGYL
NTDLKRGAAA LDRLEPVLHA PVAIADPATP VPITRLRGDI AFDHVTFAYN GGEPALRDAS
ITIPAGTVCA LVGPSGAGKT TFANLVPRFY EVGAGRVTVD GHDVRALRLA DLRRNIAIVS
QDPVLFNDTI YNNLLLGRPD ATREEVVAAA VDAHADEFIR SFSDGYDSTV GERGALLSGG
QKQRLALARA FLRNAPILIL DEATSALDSQ SEQMIQEALK KLVVGKTVLI IAHRFSTIRD
ATMILVFDRG EIVASGAHAE LYAGNELYKS LYDQQNVGAT IGNGL
|
|---|
| |