| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2299 |
|---|
| Symbol | |
|---|
| ID | 6205908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 2966808 |
|---|
| End bp | 2967737 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641691954 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001819181 |
|---|
| Protein GI | 182414115 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1533] DNA repair photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.002919 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCGA TCAATCCCTC TGGCCTTTGG AAAAAACGCC TCGGCGACTG GGTGATCAAC
CCATACGTCG GGTGCGAACA TGGATGTTAC CACTGCTATT GTCCGGCGAT GCCCGGCGTA
AAATTCAACA ACCAAGGCCA CAAGCAGCGG GACTGGGGCA GATACCTGCT CCCGAAGGTA
GGCATCGTTG AGGCCCTGAG GGAACAACTG AAACGTTTCA CACCGGATAA GGCTCGCACC
ACTGAGTGGG GCGACGGTTG GATCCTGATG TCGTTTCTCA CGGACTGCTA CACTCCAACC
GAGGCCAAAC TCAAGCTCAC CCAGCAATGT CTGAAACTGC TGCTTGAGGC AGGCCATAAA
GTGCGGCTGC AGACTCGATC CGCACTGATC GAACGGGATT TCGATTTACT CGTCGCGCAT
AAGGATCGCG TGCTAGTAGG CACATCCCTT CCTTACTTGG ACGACCGGCT GGCACGAGCG
CTCGAACCAC GTGCCACTGC CCCCAGTCGT CGCTTGAAGA TGCTGCAGCG GGCCCATGCC
CGCGGGCTTG AAGTCTATGT CTGCGTTGCC CCTTTCATGC CTTTCCATGA TCGGAAGGTC
ATGGACGAGG TGTTGCGAGA GATTCGGCCA TTCTCGCCTC GCGAGATTTT TTGCGAGGTG
CTGAATCCTA AGGGCGACAA TATCGCGATG ATGCGCGAAG CGCTGCAGAC AAAGTTTCCA
GAGGAAGCCT CGCGGATGCA GAACTATAGC GCGAAATATT GGGCGCAGTT CACATGGAAG
GTTCTTTCTT TCGGGCTTAA GCGAAACACC CGTTTCATTC CTTGGCCAGA TACTCAACGG
TTCTGGAAAA CCCACCTCAC AGTCGAACAG ACTGCATTTC TTGATCGGTA TCTTCCGCCT
CCTACGGCCG GTGAATTGGC CATCGCGTGA
|
|---|
| Protein sequence | MTPINPSGLW KKRLGDWVIN PYVGCEHGCY HCYCPAMPGV KFNNQGHKQR DWGRYLLPKV
GIVEALREQL KRFTPDKART TEWGDGWILM SFLTDCYTPT EAKLKLTQQC LKLLLEAGHK
VRLQTRSALI ERDFDLLVAH KDRVLVGTSL PYLDDRLARA LEPRATAPSR RLKMLQRAHA
RGLEVYVCVA PFMPFHDRKV MDEVLREIRP FSPREIFCEV LNPKGDNIAM MREALQTKFP
EEASRMQNYS AKYWAQFTWK VLSFGLKRNT RFIPWPDTQR FWKTHLTVEQ TAFLDRYLPP
PTAGELAIA
|
|---|
| |