| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2227 |
|---|
| Symbol | |
|---|
| ID | 6208879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 2867734 |
|---|
| End bp | 2868882 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641691882 |
|---|
| Product | endo-1,4-beta-xylanase |
|---|
| Protein accession | YP_001819110 |
|---|
| Protein GI | 182414044 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3693] Beta-1,4-xylanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.470132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0116576 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACTT TCCCTTTTCT CCCTCCGCTT CTCGCTCTCG CCGCCGCTCT CAACCTGCCG
AGCGCGGTGG CCGCGGAGGC GGCCGCGGCG CCCGCACTGA AGACGGCTGC GGACAAGCTA
TTTCTCGTCG GCGCGGCCGT GGGACCGGGC CACACTTCCG GGCGCGACAA ATCCGGCGTC
GCAGTGATTG AGCAGCATTT CAACACGATC ACGCCGGAGA ACGCGATGAA GTGGGAGCGG
ATTCACCCGA AGCCCGGCCG CTACGATTTC AAACTGGCGG ACCAGTTGGT CGAGTTTGGG
CAAAAGCGCG GGATGTTCAT CGTGGGCCAC ACATTGATGT GGCATTCACA AACGCCGGCG
TGGGTGTTCG AGGATGAGGC CGGCCAGCCG ATCTCCCGCG AGGCGCTGCT CGAGCGCCTG
CGCGAGCACG TCCGCACGGT CGTCGGTCGT TATCGCGGCA AGGTCCACGG TTGGGATGTG
GTCAACGAGG CCATTCGCGA CGAGGATGGT ACGCTGCGCA CCGACAAGCC GTGGTATGCG
ATCCTCGGCG AGGAAGGCGT GTTCGCGGCG TTTGCGGCGG CGCACGAGGC GGATCCGGAC
GCGGAGCTCT ACTACAACGA TTACTCGCTG GACAATCCGG TGAAGCGGGC GGGCGTGATC
AAGCTGGCGC AGGCGATCCG CGCGCGCGGG CTGCGGATCG ACGGCATCGG TTCGCAGGAG
CACTGCCTGT TGCACTGGCC CCAGATCGAA GCCGTGGACC AGACCTACGC GGACCTGAAG
GCGGCGGGGT TCAAGGCGAT GGTCACGGAA CTCGATGTGA GCGTGCTGCC ACGACCGGGC
AACTACACCG GCGCAGAGGT GTCGCGGCGT CAGGCATCCT CGCGCGACAT GGATCCTTAC
CGGAAGGGTT TGCCGGCGGC GCAGCAGCAG GCGCTGGCGC AGCGCTACCG CGAACTTTTC
GCCGTCTTTG CGAAGCATCA CGACACGATC CAGCGGGTGA CGCTGTGGGG TGTTTCGGAT
GCGGACTCCT GGCTCAATGG CTGGCCGATT CGCGGGCGCA CCGACTACGC GCTCTTGTTC
GACCGCGAGG ATCGGGCGAA GCCGGCCCTG GCAGCCGCAG TCGACGCGCT GCAAACCGCG
CAGCGATAG
|
|---|
| Protein sequence | MHTFPFLPPL LALAAALNLP SAVAAEAAAA PALKTAADKL FLVGAAVGPG HTSGRDKSGV
AVIEQHFNTI TPENAMKWER IHPKPGRYDF KLADQLVEFG QKRGMFIVGH TLMWHSQTPA
WVFEDEAGQP ISREALLERL REHVRTVVGR YRGKVHGWDV VNEAIRDEDG TLRTDKPWYA
ILGEEGVFAA FAAAHEADPD AELYYNDYSL DNPVKRAGVI KLAQAIRARG LRIDGIGSQE
HCLLHWPQIE AVDQTYADLK AAGFKAMVTE LDVSVLPRPG NYTGAEVSRR QASSRDMDPY
RKGLPAAQQQ ALAQRYRELF AVFAKHHDTI QRVTLWGVSD ADSWLNGWPI RGRTDYALLF
DREDRAKPAL AAAVDALQTA QR
|
|---|
| |