| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2220 |
|---|
| Symbol | |
|---|
| ID | 6206871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 2860811 |
|---|
| End bp | 2861980 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641691875 |
|---|
| Product | endoribonuclease L-PSP |
|---|
| Protein accession | YP_001819103 |
|---|
| Protein GI | 182414037 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0672592 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGCA ACACGCAGGA AGCGTTCGGC GCGTGCCGCG TGGAGGTTCG CACCAACGAA
CACGAATCGT TCACCGAGTA TCACCTCACT GCCACGATCA ATGGTACGAT GTCGGTCGCG
CTCGCCGCCG ATCAGGCCTT CAACGACGTG GCCGCGGTGC TCGCGCAGAA AAGCATCCAG
CCGATCCAGG AGAAAATCTA TGGCTACGCC CGCGTGCGCG AGCAGGTGCT GCAGCGCCGC
GAGGCCGCTT ACCGCGCCCA TGGCATCGAC CGCAGCATGC CCGCCACGTG GATCCAAGGC
ACGCCGCTCA ACGGTTGCGA GTTCGTCGGC CTGCAAATCT GGGGCATCGT CGCGCATAAT
GGCGAAGCGT GCGTCACGAC GGTGGAAAAC CCCGTCACCG GCCGCGGCCG TTTGTGGAGC
GGCGCCGGCT TTCGCCTGCT ACATCTCGCG GGCGTGCGCG GCACGACGCC GGATGGCGTG
CTCGCCGCGG GGCACTGCGC GCAGGCCGAG GCGATGTTCA ACAATCTCGG CGCCGGCCTG
GCCGCACACG ACTTTCACTA CAACCAGGTT GTCCGCACGT GGATCTACGT CCGCCGGCTG
CTCGAGTGGT ACAGCGATCT CAATCGGATC CGCACGTCGA AATACACCTC CGTCGGACTC
GGCGTGTCCG GTGGCCCCGC GCACCCGGCG AGCACGGGCA TCCAGTGTTT CAGCGACGAC
GAGGAATGCA TCGTCGACGC CCTCGCGCTC GACACCGACG GCCGCAGCAT GGTCGCGACG
CCGATCCGCA AAAGTCCGCG GCAGGATTCC TCCTTCAACT ACGGCTCCGC GTTTTCGCGC
GGCATGACGC TCGCCATCGA GGGCCGCAAG ATCGTCCACA TCTCCGGCAC CGCGAGCATC
AACAGCGCGG GCGCCAGCAC TCACGTGGGT GACGCTGAGT GCCAGAGTCT CGAGACGCTG
ATGAGTATCG CGGCCATCCT CGAGGAACAA GGCGGCTCGC TGAAGAACAT CACCTCCGCC
ACGTTGTTCT GCAAAGACCG CGCCGCCTGG GAAGCCTGGG AACGCGTCAC CCGTCTGCTG
CAGATCCCCG CCTTGCCGAA GGTCTGCGTG ATCGCCGATG TCTGCCGTCA CGACCTGCTG
GTCGAGATGG AAGCCGTGGC GGTAATCTGA
|
|---|
| Protein sequence | MKSNTQEAFG ACRVEVRTNE HESFTEYHLT ATINGTMSVA LAADQAFNDV AAVLAQKSIQ
PIQEKIYGYA RVREQVLQRR EAAYRAHGID RSMPATWIQG TPLNGCEFVG LQIWGIVAHN
GEACVTTVEN PVTGRGRLWS GAGFRLLHLA GVRGTTPDGV LAAGHCAQAE AMFNNLGAGL
AAHDFHYNQV VRTWIYVRRL LEWYSDLNRI RTSKYTSVGL GVSGGPAHPA STGIQCFSDD
EECIVDALAL DTDGRSMVAT PIRKSPRQDS SFNYGSAFSR GMTLAIEGRK IVHISGTASI
NSAGASTHVG DAECQSLETL MSIAAILEEQ GGSLKNITSA TLFCKDRAAW EAWERVTRLL
QIPALPKVCV IADVCRHDLL VEMEAVAVI
|
|---|
| |