| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2167 |
|---|
| Symbol | |
|---|
| ID | 6206816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 2779755 |
|---|
| End bp | 2785766 |
|---|
| Gene Length | 6012 bp |
|---|
| Protein Length | 2003 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641691820 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_001819050 |
|---|
| Protein GI | 182413984 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.154621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGGT TCCTCGACCT TCCGTCCGCT CCTGGTAGCT GTGGCAACCG TGATGCACCC
GCGCTGCGGC CGAGACACTT TTTGGAGACC ATGAGTACGA ATACAAAACG AGACAGTTGG
ATCCATCATG GGGCCTTTGT CAGGATCGTC CTCGCGATGG GGGTGCTGAA TCTGGCAAAC
GTGTGTAGGG CGGCGGTGGA CCTTCCCGAG GGTTTTCCGG CCATTATCTG GCACCCGCAA
TCCCAGACCG TCACCGCTGG GATCAACATT TCGCTTACGG TGGTGGCATC CGGCGCGGCC
CCGCTGAGTT ACCAGTGGAA GAGGAATGGC GTCGACATCA CGAACGCGAC GGGCTCCGCC
CTTGCCTTGA ACAATGTGCA GGCGGCAGAC CTCGGCAGCT ATACGGTGGT CGTCAGCAAT
GCAATCGGCA GCGCCCTTTC GAATCCGGCG ATCATCTCCG GAATAGAACG TTTCTTCAAC
GGACATGCCT ATGACGTGAC GCCGCAAGGA ATGGAATGGA ACGAGGCGGA GAACTGGGCG
AAGTCACGCG GCGGGCACCT GGTGGCGATC AACAGTCAGG CCGAGCAGGA TTTCCTGCTG
CGGAATTTCG GCGCCGAGCC GTCGTACTGG ATTGGGCTCT CCGACCAGGC GGCCGAAGGT
GACTGGAGTC GATGGTCCAA CGGGGAACCG GCGACCTACG GCAACTGGGC GTCCGGCGAA
CCGAACAACG CCAATGCGGG CGAGGCGTTC GCGATGATGA ACTGGAACAC GAACCAGGGG
ATTTCCGGGT TGGGGCAGTG GAATGACCTT CCGGGCGGAC GGACGCCGGG AATCATCGAA
TACGTCATCG GCGGCGCCCG CGCACCGGCA CAAAAAAAGC CGCTGGAGGC AAAGCTGATT
GTTCCAAACG CGCTGGGCCG GCATGTGACG GCGACCCTGT ACGTGGAGTG CACCAACAAC
AGTACGGTCG CGATACCGGC TCCGCTCTTG CTGGTGCGCA GCGCCGACCG GGCGTTGCTG
ACGCTCGATC CGGCTCGCGT CGTGGCGGGT TTCTGGAGTT CGGTCGCGGT GGAAGGATTT
GCGGACACGG TGCAGATTCT CGCCAGCGGC GCCGCCCCGG GCGTCCTGGC GCCGGGTGAG
TCGGTCCGCG TTCCCGTGTA TTATGCCGGG CTGCAACAGC CCTGGAATTT CGGCGACAGT
CAGCTCGAGT TCGAGGTGGG AGCACTGACC GCCGACAGCG AAGATCCGAT TGATTGGTCC
ACGCTCAAAG GCCGCCTGCG CCCGGCGTCG ATGAGCGATG CGGGGTGGGA GGCGGTCTGG
ACGAATTTCG TCGCAGGCGC CGGACATACC TGGGGCGAGT ACGTGACCAT GCTGAACGAT
AATGCGGCGT TTCTGGGCCG TATCGGCCGC CGCGTGGTTG ACGTGAATCA GTTGCTCGGG
TTCGAGCTGC TGCAGGCTGA TGGGTTGGGA CCGGTTCGGG TCCTTGCCGC CGCCAGCGAT
GCCCAGGCGG CAGGGCCGGG ATTGGATCTG GTCTTTGCGC GCAGCTTTGG CGCGGCAATC
TCTCCCCGCT TCGAGGTGGG AGCGTTCGGG CGGGGCTGGA CGCACAACTG GCAATACTCC
GCGCAGCGGG CGGGTGACGG CACTGTCACC ATCCTCGGTC CGGCCGGTTC GCGCCGCATG
TTCCATCCCG ACAGTCGCGC CGGCACCAGA TACTTCACCC AGCCGGGTGA TCACGGCGTG
CTCGCTGCGC TCCCAGGAGG CGGATTTACG TTGAGCGAAA CCGATGGATT GGTGCGGGCG
TTTCGGTCCG ACGGCCGACT GGATTACGTG GCAGTTCCGA ACGGCAATCG GATCACGGCC
CGCTGGACTG GTGATCTGCT CACGCGGCTG GAGCACTCCA ACGGCCGCGG GCTCGACATC
ATCCACGATG GCGGGCTGAT CCGCTCGATC ACCGACCCCA TTGGACGGAC GACGGCCTAC
AGCTATGACA CCGCGCAGCA CCTCACGGGC GTTCGCTACG CCAGTGGCCA GGAGATCGGT
TACGAGTACA ATACGATTGC TGGCGCACCC GGCGAACACG CTCTGACGCA GATCAACGAA
TCCGGTGGCA CCCATAAGAG CGTCAGCTAC GATGCGGCCG GCCGGCTTGC CGGCACCAGC
CTCTCCAGCG GCGCCGAAGC GCTTGGCTTT GCCTACGACA GTGCCGGCAG GGTCACGGTG
ACCGATGCGC TCGGTCACGC GACCCGGCAC TTTTTCGACT ACCGGGGATT GCTCGCGAGA
ACCGAGGATG CCCTCGGACA CCCCGTGCAG ATGACGTTTG ATGACGAACA TAATCTCGTG
GAGCTGACCG ATCCGGCGGG CGGCAGCTAC CGCTACACCT ACGATTCGAA AGGCAATGTG
ATCGAAGCGG CGGATCCGCT CGGAGCGACG ACGCGCTTTG CTCATGCTGG CGCCTTCAAC
CGGCTGGCAT CCGTCACCGA TGCCAAGGCC AATCTCACGC GGTACACGTA CACGACCGAA
GGCGATCTCC AGTCGATCAC CTATGCGGAC GGCAGCGTTG AACGCTGGAC ATACGATGCG
AACGGCAACG CCAGCGGCTG GACCAACCGT CGCGGACGGA CGATCGCCTA CGCCCGCGAC
AACGACGGGC GGCTTACGAC AAAAACGTTG GCCGGCGAGA GTCGGACGAC TTTCGACTAC
GACGTCCGGG GCAATCTCAC GTCGACCACA GATGCCACCG GCACCACGCG ATTCGACTAC
GATGCCCGGG ATTGGTTGAC CCGGATCACC TATCCGACGG GGCCATGGCT GCAGTTCACC
TACGACGCTG CGGGCCGCCG CGCGACGAGT CTCGATCAAC TCGGACATCG GTTGAACTAT
GGTTACGACG CGGCCGGCCG GTTGGAGCAA CTGACGGACG AGCAAGGCCG GAGGATTGTG
CACTACACCT TTGACGCGGC GGGACGCCTG GCTGGCAAGA CGCTCGCCAA CGGGCTGACC
GCGACGTACG CCTACGACAC CGCCGGGCAG TTGCTGGTCC TAACCAACGC ACTCGCCAGC
GGCGGCACGC TTTCACGCTT CGCCTACGCC TACAACGATC GGGGCCGTCG CACGGCGATG
GAGACGCTCG AGGGCCGTTG GACCTACGAC TACGATGCGT TGGGCCAGCT CACTCGCGCG
GCGTTCGCTT CTACCAATCC GGCCGTGGTT CCGAACCAAG ATCTAGCGTA TGTCTACGAT
GCGCTTGGCA ATCGCATCCG GACGGTCGAA AACGGCGTCA CCACCGAATA CTCCAGCAAC
AATCTGAACC AATATGTGCG CACGGGCGAC ACGACCTATC GCTTCGACGC GGATGGCAAC
CTGGTGCAGG AAGCCACGGC TGAAACCACC ACGACCTACA CCTACGACGA CGAAAACCGG
CTTGTGGCTG TGCGCAGGGG GACCGACACG TGGAGTTACG GGTACGACGC GTTTGGCGGG
CGCGTGACGA GTTCGGAGAA TGGCGTTACG ACCCGGTTCG TGCTCGACCC GATCGGGCTC
GGCAACGTCG TCGGCGAGTA CGACGCGGCG GGCGAACTGA TCGCCCGCTA CGACCATGGG
TTTGGGCTGC TGGCGCGCGC TGATCCGGCG GGCATCGAAG CCTACTACGC ATTCGACGCG
CTCGGCAGCG TGCAGCAGGT CGTCACGGCC GCAGGCGAAG TGGCGAACCG GTACACCTAT
GCACCATTCG GTGGGTTGAT TGGGAGAACG GAGACGCTCC CGAATCCGTT TCAGTTTGTC
GGGCAGGTTG GGGTGATGAG CGAGTCCAGC GGATTGGGCT TCATGCGCGC GAGATTTTAC
AGCGGACAGT GTGGGCGATT CATCCAAGCG GATCCGATCG GTCTAGCCGG TGGATTGAAT
CTGTACGCCT ACACGATGAA CGATCCAATC GGAGTTGATG ATCCATCAGG GAAATTTGTC
CCGATTGCCG TGCAACTGGG CGTTGGAGTC ATTGCCTATT ACGTCGCATC CCGAGCGTTC
GTCTATTGGC CGCGGATTGC TCCCGTTGTG TCCATTGTTG AACAATTGCC CGAGGGTGTG
CCCGGCCCTG TTACCGACAT AGGCGGACTG GCGGGATTTG GGCTGAAAAA TGGTCGCGAT
CTGGCGCAGC TTTCTAACGA AACGCTGTAC GGCATTGCGG CCATCAACCA AACGGTCGGA
AACGCGATGC TGGACTGGAT CGCTCGAGCC ATCAATCCGC CGTCGTACAT GACGTCGATT
CAAACGTCGA ATCCTCCGGT TCCGCCGTAC CAAATACTGG TTTCTGAAGG AACGTATGTC
GCATTCTCGC AGGATCCCAA CGCCAAGACG GGACCGACGG GATTTGGCGA ACCCAACTAC
GTTTCTCCGA GCGGGGCGTT TGGCTATCGG ATCGACTTCG AGAACGACGC CCACGCGACC
AGTCCGGCGC AGCAGGTTGT CATCACCGAT CAACTCAGCC GCGATCTGGA CTGGGCGACT
TTCCAGTTGT CCGAAATCGG CTTTGGCGAT TCGTGGATCG TCGTTCCGGC CGGGAGCCGG
AGTTTCGAGC ACACCGAGCA CGTCACCTAC GATGGCGTCG ATTTCGACGT GCAGATCGAG
GTCACGCTCA ACCCCGCATC AGGTGCGCTG TCCGCGACCT TCCGATCGGT CGATCCGCGG
ACAGGTTTGC CACCACCCGT GAACATCGGA TTCCTGCCGC CGGAAAACGG CACGGGCCGC
GGACAGGGTC ACCTCTCCTA CACGATCGCG CCAAGGCACG GACTTTCCAC CGGCACCGCC
ATTCGCAATG TCGCGCTGAT CTCCTTTGAC GGTCAGCCCA CCATCGCCAC AAACCAGCGT
GATCCCCACG ATGCCAGCCG GGGAACCGAT CCCACCAAGG AGGCGTTGCT GACGATCGAC
GCCGATGCGC CGACTTGCGA CGTGGTCGTC CGGCCCATCG CCGGCTCGCC AAACCGCCAT
ACGGTGGGCT GGTCGGGCAA CGACTCAGGT GCTGGCGTGG CCGGTTTCGA CATCTACATG
TCGATCGACG ACGGCCCTTG GATGCTGTGG CAGGTCAGTG CTACCGCGTC TTCGGCCGCT
TTCGACGCGA TGGCTGGCCG GACCTACCGG TTTTTTGGCC AGGCGCGGGA TGCGGCGGGC
AATCTCGGCA ATCCCTCGAG CGAAGTTCGT CCCGCGGCGT TGAGCCAGCT CGTCAATTTC
TCGATTCGAT CTGCGGCCGG CCTCGGCAGC GATACCCTGA TCGTCGGATT TGTCGTGAGT
GGCGGCGCCA ACAAGTCGCT GCTCGTGCGT GGCGTCGGAC CGTCGCTCGG CGGGCAGGAC
GTGCAGGGGC CTCTCGCCGA TCCGATTCTC ACGCTCTATT CCGGCACTGG TGCGGTGATC
GATTCCAACG ACGACTGGGG CAGCACCGCC AATGGCTCTG TCATCGCAGC CACGACGCTA
AAGCTGGGGG CCTTTGCCCT GCCGGACGAT AGCCGCGATG CCGTGGTGAT GCCTACATTG
GCGAGTGGCG TCTACACGGT TCACGTTACA GGCAAATCGA CGACAACCGG GGTGGCACTC
ACAGAAGTCT ACGACGCCGC CGTAACCACC AGCGCCGCCC GGCTCGTCAA CGCTTCAGCG
CGAACCCGGG TGGGAACCGG TGATCAGATC CTCATCGCGG GCTTCGTGAT CGTTGGCGAT
GGGAGCAGAC CGCTGCTCAT CCGTGGCATT GGTCCGACCC TAGCGGAGCT TGGAGTGGAG
GGAGTGCTCA ACGACCCGCA ACTCGTGCTC TACCGGCAGG GTGTCGCTAC CCCGCTTGAA
CAGAACGACA ACTGGGGCGG AACCACGGTG CTGCGCACCG CGTTTGGCTC AACAGGCGCG
TCCTCGCTGG ATGGCTCCAG CAAGGACGCC GCGGTGTTGG TAACCTTGCC TGCCGGCGCC
TACACGGTGC ACGTCAGCGG CGTGGGCAAC ACGACGGGCG TCGCCCTCGT TGAAGTCTAC
GAACTCCCAT GA
|
|---|
| Protein sequence | MIRFLDLPSA PGSCGNRDAP ALRPRHFLET MSTNTKRDSW IHHGAFVRIV LAMGVLNLAN
VCRAAVDLPE GFPAIIWHPQ SQTVTAGINI SLTVVASGAA PLSYQWKRNG VDITNATGSA
LALNNVQAAD LGSYTVVVSN AIGSALSNPA IISGIERFFN GHAYDVTPQG MEWNEAENWA
KSRGGHLVAI NSQAEQDFLL RNFGAEPSYW IGLSDQAAEG DWSRWSNGEP ATYGNWASGE
PNNANAGEAF AMMNWNTNQG ISGLGQWNDL PGGRTPGIIE YVIGGARAPA QKKPLEAKLI
VPNALGRHVT ATLYVECTNN STVAIPAPLL LVRSADRALL TLDPARVVAG FWSSVAVEGF
ADTVQILASG AAPGVLAPGE SVRVPVYYAG LQQPWNFGDS QLEFEVGALT ADSEDPIDWS
TLKGRLRPAS MSDAGWEAVW TNFVAGAGHT WGEYVTMLND NAAFLGRIGR RVVDVNQLLG
FELLQADGLG PVRVLAAASD AQAAGPGLDL VFARSFGAAI SPRFEVGAFG RGWTHNWQYS
AQRAGDGTVT ILGPAGSRRM FHPDSRAGTR YFTQPGDHGV LAALPGGGFT LSETDGLVRA
FRSDGRLDYV AVPNGNRITA RWTGDLLTRL EHSNGRGLDI IHDGGLIRSI TDPIGRTTAY
SYDTAQHLTG VRYASGQEIG YEYNTIAGAP GEHALTQINE SGGTHKSVSY DAAGRLAGTS
LSSGAEALGF AYDSAGRVTV TDALGHATRH FFDYRGLLAR TEDALGHPVQ MTFDDEHNLV
ELTDPAGGSY RYTYDSKGNV IEAADPLGAT TRFAHAGAFN RLASVTDAKA NLTRYTYTTE
GDLQSITYAD GSVERWTYDA NGNASGWTNR RGRTIAYARD NDGRLTTKTL AGESRTTFDY
DVRGNLTSTT DATGTTRFDY DARDWLTRIT YPTGPWLQFT YDAAGRRATS LDQLGHRLNY
GYDAAGRLEQ LTDEQGRRIV HYTFDAAGRL AGKTLANGLT ATYAYDTAGQ LLVLTNALAS
GGTLSRFAYA YNDRGRRTAM ETLEGRWTYD YDALGQLTRA AFASTNPAVV PNQDLAYVYD
ALGNRIRTVE NGVTTEYSSN NLNQYVRTGD TTYRFDADGN LVQEATAETT TTYTYDDENR
LVAVRRGTDT WSYGYDAFGG RVTSSENGVT TRFVLDPIGL GNVVGEYDAA GELIARYDHG
FGLLARADPA GIEAYYAFDA LGSVQQVVTA AGEVANRYTY APFGGLIGRT ETLPNPFQFV
GQVGVMSESS GLGFMRARFY SGQCGRFIQA DPIGLAGGLN LYAYTMNDPI GVDDPSGKFV
PIAVQLGVGV IAYYVASRAF VYWPRIAPVV SIVEQLPEGV PGPVTDIGGL AGFGLKNGRD
LAQLSNETLY GIAAINQTVG NAMLDWIARA INPPSYMTSI QTSNPPVPPY QILVSEGTYV
AFSQDPNAKT GPTGFGEPNY VSPSGAFGYR IDFENDAHAT SPAQQVVITD QLSRDLDWAT
FQLSEIGFGD SWIVVPAGSR SFEHTEHVTY DGVDFDVQIE VTLNPASGAL SATFRSVDPR
TGLPPPVNIG FLPPENGTGR GQGHLSYTIA PRHGLSTGTA IRNVALISFD GQPTIATNQR
DPHDASRGTD PTKEALLTID ADAPTCDVVV RPIAGSPNRH TVGWSGNDSG AGVAGFDIYM
SIDDGPWMLW QVSATASSAA FDAMAGRTYR FFGQARDAAG NLGNPSSEVR PAALSQLVNF
SIRSAAGLGS DTLIVGFVVS GGANKSLLVR GVGPSLGGQD VQGPLADPIL TLYSGTGAVI
DSNDDWGSTA NGSVIAATTL KLGAFALPDD SRDAVVMPTL ASGVYTVHVT GKSTTTGVAL
TEVYDAAVTT SAARLVNASA RTRVGTGDQI LIAGFVIVGD GSRPLLIRGI GPTLAELGVE
GVLNDPQLVL YRQGVATPLE QNDNWGGTTV LRTAFGSTGA SSLDGSSKDA AVLVTLPAGA
YTVHVSGVGN TTGVALVEVY ELP
|
|---|
| |