| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2092 |
|---|
| Symbol | |
|---|
| ID | 6205745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 2682538 |
|---|
| End bp | 2686353 |
|---|
| Gene Length | 3816 bp |
|---|
| Protein Length | 1271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641691743 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_001818975 |
|---|
| Protein GI | 182413909 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.346877 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0514777 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGTCAG CGGATCCGAA TTTCGTTCAT CTCCACGTCC ACAGCGACTA TAGCCTGCTC
GATGGCTCCT GCCGCATCGA CCGGCTGCTG AAGCGCACGA ACGAGCTGGG GATGAAGGCG
ATTGCGCTCA CCGATCACGG CAATCTCTAC GGTGCGATCG AGTTCTACAA GGCCGCCAAG
GACGCCCAGG TCAAACCGCT CATCGGTTGC GAGCTCTACC TGGTCGAACA TTCCCGCCTC
GAGAAACACG GTCGCTCGGA CGACGACGGA AAGACGATTT TCCACCTCGG GCTGCTGGCG
CGAAATCTCA CCGGCTATCA GAATCTGCTG AAGCTCGTCT CCGACGCGCA CCTCAAGGGC
TTCTATTACA AGCCGCGCAC GGACATCGAA ACGCTCGCGA AATACGCGGG CGGGCTCATC
GGCTTCTCCG GCTGCCTCGC CTCATTGGTG CCGCAGCACC TGCTCAACGA TCGCGAGGAC
GAAGCCCGCA AGGCCTGCGC ACGCTTCGTC GAGATCTTCG GCCGCGAAAA CTACTTCATC
GAACTGCAGG ACCACGGAAT CCCGGAACAG CGCAAGATCA TCCCCGGCCT GCTCGACCTG
GCGCAGGAAT TCAAGCTGCA GGTCATCTGT TCGAACGACG TCCACTACGT GAACCACGGC
GACGCCGGTC CGCACGACGC GATGCTCTGC ATCCAGACCG GCTCGAAGAT CGACGACGAG
AAACGGATGC GCTTCAGCGG CTCGCAGTTT TATCTGAAGT CGCGCGAGGA AATGGCCCAG
GTGTTCCGCG AAGTGCCCGC GTCGCTCACG AACACCCAGC TCGTGGCTGA CATGTGCGAG
CTCGCGATCC CGTTTCCCAA AGGCAGCGAG CGCTATCCCA AATATCCCCT GCCGCCTGAG
ATCAAAACCG ACCGCGGCGG CTACCTCCAG GATCTCTGCG TCGCCGGTCT CCGCCGCCGC
TATGGCGTCG ACTACTTCGC CGCGGCCTCG CATCCCGCCG CCGCCGAACG ACTCGACAAA
CTCACCAACC TGCCCGCCGG CGAAAAGCCG CAACCGCCCG ACTACACCGG ACTCACCCAC
GAGGAAGAGC TCGTCGTCCG GATGGGCTAC GAGCTGTCGA TCATCCGCGT CACCGGGTTC
ATCGACTACT TCCTCGTCGT TTGGGATTTC ATCGCCTGGG CCAAAAGCCA CGGCGTGCCC
GTCGGCCCGG GCCGCGGCTC CGGCGCCGGC TGCCTCGTCG CCTACCTGCT CGGCATCACC
AACCTCGACC CGCTCCGGTT CAAGCTGCTG TTCGAGCGCT TCCTCAATCC CGAACGCGTC
TCGCCGCCGG ATTTCGACAT CGATTTCTGC ATGCGCCGGC GCGAGGAGGT TATCAACTAC
GTCCGCGAAA AATACGGCAA GGACTGCGTC GCGAACATCA TCACTTACGG CACGCTCGGC
GCGAAGATGG TGATCCGCGA CGTCTCGCGC GTGCACAACC TGCCGTTCGC CGAGGCCGAC
CGCTTGGCGA AGATGATCCC CGACGAGCTC AACATCACGC TCACCGACGC GATCGCCAAA
TCCGCCGAGC TCAGCTCCGA GATCGCGCGC AATCCCGTCG CGAAAAAAAT CGTCGACCAG
GCGCTCGTGC TCGAGGGCAT GGTGCGCAAC ACCGGCAAGC ACGCCGCCGG CATCATCATC
ACCGACCAGC CACTCGACGA CTTCGTCCCG CTCACGCTGC AAGAAGGCGA CGTCACCGTG
CAGTTCGACA TGGGCGCGGT GACCAAGCTC GGGCTGCTGA AGATGGATTT TCTCGGGCTG
AAGACGCTCA CCGTCATCGC CGACGCGGTC GACAACGTCC GCCGCACCGC CGATCCGAAG
TTCGACATCG AGACCATCCC GCTCGACGAC CCAAAGACCT ACGCGATGCT CAACGCCGGC
AAGACCGTCG GCGTCTTCCA GCTGGAATCC AGCGGCATGC AGTCGGCGTG CAAGCAGGTC
GGCGTCTCGA ACATCGACGA CATCAACGCG ATCTGTGCGC TCTACCGACC CGGCCCGATG
CAGTTCATCC CCGACTACGC CCGCGGCAAG AAGGACCCGA GCACCGTCGA GTATCCGCAT
CCGCTGCTCG AACAGTCGCT GCAGGAGACC TACGGCATCA TCGTTTACCA GGAGCAGGTG
ATGGAGTGCG CGAAGATCAT CGCCGGCTAC ACGCTCGGCG GCGCCGACAT GCTCCGCCGC
GCGATGGGCA AGAAGGACGC GGAAGCGATG GCGAAAGAAC GCGTGAAGTT CGTCGAGGGC
GCCAAGCGCG TGAACGCTAT CGACGAGAAG AAGGCGAACG AGATTTTCGA CCTACTCAAC
AAGTTTGCCA GTTACGGCTT CAACAAGTCG CACTCCGCCG CCTACGCGCT CGTCAGCTAT
CAAACCGCGT TCCTCAAGGC CAACTACCCG GTGCAGTTCA TGGCCGCCGT GCTCACGGCC
GAACTCGGCA ACGCGGAAAA GGTCTCGCAC TTCATTGCTG AAGCCGAGGC GATGGGCATC
ACCGTGCTCG GCCCCGACAT CAACGAGTCG CGCGAAATGT TTACGCCGGT CCTTCGCGGC
GCATCCTCGC CGCGAGCCCA GAGCCCAGAG TCCAGAGTCC AGAGCCAGGC AGATTCGGAG
CTCTCAGCTC TCAACTCTCA GCTCTCAGCT GCCGAAGCGG ATCGAGCCGG CGGCGCGATC
CGCTTCGGAC TCGCCGGAAT CAAGGGCGTC GGTGAGCTCG CCGCGCAGAA GATCATCGAG
GAGCGCGACA AGAACGGCGC GTTTTGCGAC TTCGATGACT TCGCCGCACG GATGGATGGT
CGTGCCGTCA ACAAGCGCGT GCTGGAGCAT CTGGTGAAGA CCGGCGCCTT CGACTACAGC
GGCGCACCGC GCAAGCCGCT CTTCGACGGC ATTGACGCCG CGCTCGCCAC CGTCGCCGCC
CGGGCCCGCG ATCGCGCTGC CGGCCAGCAC AGTTTCCTCG ACATGTTCGC CGAGGACCTC
GCGCCCAAGA AAAACGGCAA GAATGGCTCA AACGGCCATG GAGCCGCGAC GCCCTCGTCG
CGGCCGGCTT CCGGCTCCGA CTTCTCCACT CTCGACTCTC AACTCTCAAC TTCTTCGGAC
GACTTCACCT CCACCGAGCG GCTCACCTTC GAAAAGGAGC TGCTTGGTTT CTACGTCTCC
GGACATCCGC TCAACGTTTT CGCTGGGCTG ACTGAAGCGA TCGACACCTA TCCGATCACC
GAACTGTTGA ATCAGGGCGA CCGCACGGAA TTTCGGTTGT GCGGCATCGT GTCCGGCATT
GCCAAGCGGC TCTCGAAAAA AGACAACCGC CCGTGGGCCA GCTTCACGCT CGCGACGAAA
GCGGGGGCGC TGCCGCTGAA CATGTTCGCC GATGGCTACG CGAACTACGG CACGGTGCTC
GCGGAAAACG CGCTCGTGCT GGTGCAGGGC AACATCATCG TCAACCAGGA GGGCGCGCGG
GTGAACGTAA AGGAATGCTA CCCGCTCGAG AATCAGATCG CCGGGCTCGT CCGCAAAGTC
ACCTGGCTGC TTCGGCCGGC GCATCCGGAA CTCGCCGGCT TCTTCCACCA ACTGCGCGCC
ACGCTCGACA AACAGTCAGG CGATACGCGA TTGGAGCTGG GGTTCGCCTT CCCGAATCGG
TTCGCGCCCT GCGCCGAGAT CAGCACCGCG CTGACGTGGA AGGTGAACGG CCCGTCGTTC
CAGGCGCTTC GCTCGCATCC GGCCGTCGCG GGCGTGCAGA TCGAGACCCG TCGGTTGGAG
CTGAAGCAGG ACCGCCGCTG GGCCAAGCGC GGGTAA
|
|---|
| Protein sequence | MPSADPNFVH LHVHSDYSLL DGSCRIDRLL KRTNELGMKA IALTDHGNLY GAIEFYKAAK
DAQVKPLIGC ELYLVEHSRL EKHGRSDDDG KTIFHLGLLA RNLTGYQNLL KLVSDAHLKG
FYYKPRTDIE TLAKYAGGLI GFSGCLASLV PQHLLNDRED EARKACARFV EIFGRENYFI
ELQDHGIPEQ RKIIPGLLDL AQEFKLQVIC SNDVHYVNHG DAGPHDAMLC IQTGSKIDDE
KRMRFSGSQF YLKSREEMAQ VFREVPASLT NTQLVADMCE LAIPFPKGSE RYPKYPLPPE
IKTDRGGYLQ DLCVAGLRRR YGVDYFAAAS HPAAAERLDK LTNLPAGEKP QPPDYTGLTH
EEELVVRMGY ELSIIRVTGF IDYFLVVWDF IAWAKSHGVP VGPGRGSGAG CLVAYLLGIT
NLDPLRFKLL FERFLNPERV SPPDFDIDFC MRRREEVINY VREKYGKDCV ANIITYGTLG
AKMVIRDVSR VHNLPFAEAD RLAKMIPDEL NITLTDAIAK SAELSSEIAR NPVAKKIVDQ
ALVLEGMVRN TGKHAAGIII TDQPLDDFVP LTLQEGDVTV QFDMGAVTKL GLLKMDFLGL
KTLTVIADAV DNVRRTADPK FDIETIPLDD PKTYAMLNAG KTVGVFQLES SGMQSACKQV
GVSNIDDINA ICALYRPGPM QFIPDYARGK KDPSTVEYPH PLLEQSLQET YGIIVYQEQV
MECAKIIAGY TLGGADMLRR AMGKKDAEAM AKERVKFVEG AKRVNAIDEK KANEIFDLLN
KFASYGFNKS HSAAYALVSY QTAFLKANYP VQFMAAVLTA ELGNAEKVSH FIAEAEAMGI
TVLGPDINES REMFTPVLRG ASSPRAQSPE SRVQSQADSE LSALNSQLSA AEADRAGGAI
RFGLAGIKGV GELAAQKIIE ERDKNGAFCD FDDFAARMDG RAVNKRVLEH LVKTGAFDYS
GAPRKPLFDG IDAALATVAA RARDRAAGQH SFLDMFAEDL APKKNGKNGS NGHGAATPSS
RPASGSDFST LDSQLSTSSD DFTSTERLTF EKELLGFYVS GHPLNVFAGL TEAIDTYPIT
ELLNQGDRTE FRLCGIVSGI AKRLSKKDNR PWASFTLATK AGALPLNMFA DGYANYGTVL
AENALVLVQG NIIVNQEGAR VNVKECYPLE NQIAGLVRKV TWLLRPAHPE LAGFFHQLRA
TLDKQSGDTR LELGFAFPNR FAPCAEISTA LTWKVNGPSF QALRSHPAVA GVQIETRRLE
LKQDRRWAKR G
|
|---|
| |