| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2047 |
|---|
| Symbol | |
|---|
| ID | 6206212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 2627829 |
|---|
| End bp | 2628962 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641691698 |
|---|
| Product | arabinogalactan endo-1,4-beta-galactosidase |
|---|
| Protein accession | YP_001818930 |
|---|
| Protein GI | 182413864 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3867] Arabinogalactan endo-1,4-beta-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.074716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.58115 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCAGC GGCCCCCCTT CACCCGATGT GTCCGGCGCG GATTGCTTCT GGCTGGCGCG
CTCATGCTGG CCACGGTCGG TAGGGCGGCG GCGAGCACGA TGGCGCCCGC AACGTTCCTG
ATCGGCGCCG ACGTCTCGGC GCTCTCCACC CTCGAGCGCC ACGGCGCGGT GTATCGCGAC
AGCGCTGGGC CGCGGGACGC GCTGCAGATT CTCGCGGGCG AGGGTTTCAA CTGCTATCGG
CTGCGTCTGT TTGTGGCTCC GGACGGCAAG GGAATCGTCA CCAACGATCT CGCCTACACG
CTGGCGCTGG CGCGTCGCGT GAAGGCCGCT GGCGCGACGT TAATGCTCGA CCTGCACTAC
TCCGACACGT GGGCCGACCC CGGCAAGCAG TTCAAACCCG CGGCATGGGC GGCGCTCGCG
TTTGACGATC TCGAGCAACA GGTGCGGACG TACACGCGGG AAGTGTTGGA GCGGTTCGCC
CGAGAAGGGC TGATGCCCGA TTACGTCCAA CTCGGCAACG AGATCACGAA CGGGATGCTC
TGGCCCGAGG GCCGGGTGGA GTTTGCCGAA CGAACCAATC GCGCGGGGTG GGAGCACCTC
GGCCGGCTGC TGCGCGCGGC GCATGTGGGA TTGGCGGAGG CGAGCGAAGG CCGGCCGAAG
CCGAAGAGCG TGCTGCACAT CGAGAGTCCG CATCAACGCG AGCGCACGCT CTGGTTCTGC
CGCGAGGCAC GCGCGGCCAA AGTGCCCTTC GACCTGATCG GGATGAGCTA CTATCCGGAA
TGGCACGGCG ACCTCGAGAC GCTCCGCGGG ACGCTGGTCG CGCTCGCGAC GGAGTTTCAT
CAGCCGATCA TCGTGGCCGA GACGGCCTAC CCCTGGACGT CGGATGAGCA CTGGACGGGC
CGGCCGAACC TGAACTGGCC GCTCACGCCC GAAGGCCAAC GCCAGTTTCT GCGCGCTGTG
CTGCAAGTCG TGCGCGAACT GCCCGATGGC TTGGGGCGCG GCGTGTTGTA TTGGCACCCC
GAATCGGTGC TCACGCCCGG CCAGCGGATT TGGCTCGGCG GTTCCTGTGC GCTGTTCGAC
CACGAAGGCA ACGTGCTCCC GGCGGCCCGC TTTGCAGTCC CTAACCAACC CTGA
|
|---|
| Protein sequence | MLQRPPFTRC VRRGLLLAGA LMLATVGRAA ASTMAPATFL IGADVSALST LERHGAVYRD
SAGPRDALQI LAGEGFNCYR LRLFVAPDGK GIVTNDLAYT LALARRVKAA GATLMLDLHY
SDTWADPGKQ FKPAAWAALA FDDLEQQVRT YTREVLERFA REGLMPDYVQ LGNEITNGML
WPEGRVEFAE RTNRAGWEHL GRLLRAAHVG LAEASEGRPK PKSVLHIESP HQRERTLWFC
REARAAKVPF DLIGMSYYPE WHGDLETLRG TLVALATEFH QPIIVAETAY PWTSDEHWTG
RPNLNWPLTP EGQRQFLRAV LQVVRELPDG LGRGVLYWHP ESVLTPGQRI WLGGSCALFD
HEGNVLPAAR FAVPNQP
|
|---|
| |