| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2022 |
|---|
| Symbol | |
|---|
| ID | 6207546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 2602522 |
|---|
| End bp | 2603295 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641691672 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001818905 |
|---|
| Protein GI | 182413839 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.915436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0387606 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTCTC TGCGTGCTTT GGTGACCGGC GGATCGCGCG GCATTGGTCG CGCGATCGCG
CAGCAACTCG CGGCCCGCAG CTGCCGCGTA GCGGTTCACT ACCGCGACAA CCACACAGCC
GCCGAAGCCA CGCTCGCCAG CCTCGCCGGT CAGGGGCACA TCGCACTCGC CGCCGACATT
GGCTGCGAGG CCGACGCCGA GCGGCTCTGG AACGAATCCG TGGGTGCACT CGGCGGCATC
GATATTCTCG TCAACAATGC CGGGGTCTTT GCGCCACATC CGCCGCTCAC CACGGACCTT
ACCGCCTGGC AGGACAGTTG GCGTCGCACG CTGTCGACCA ATCTCATGGG CCCCGCGACT
CTCTCCTATC TCGCCGCCCG CGCGATGGCC GGACGCGAGT TGTTCGAGCC GCGATTCGGT
CGTGGCCGCA TCGTCAACGT TTCCTCCCGC GGCGCCTTTC GCGGGGAGCC CAAGTCGCCC
GCCTACGGCG CGAGCAAAGC CGGGCTCAAC GCTCTCAGCC AGTCGCTCGC GAAGGCGCTC
GCGCCCCAAG CGGTCTATGT CTACTGCCTC GCACCGGGCT GGGTGGAGAC CGACATGGCC
GCCGACCATC TCACCGGACC CGATGGCGAG GCGATTCTCG CCGACCATCC GCTCGGTCGC
GTCGCCACTG TCGAGGAAAT CGCCCGCACC GCCGCGTTCT GCGCACTCGA TGCGCCCGCG
GCCATGACTG GCTGCATCGT CGATATCAAC GGCGCCTCCT ACCTTCGCAC GTAG
|
|---|
| Protein sequence | MNSLRALVTG GSRGIGRAIA QQLAARSCRV AVHYRDNHTA AEATLASLAG QGHIALAADI
GCEADAERLW NESVGALGGI DILVNNAGVF APHPPLTTDL TAWQDSWRRT LSTNLMGPAT
LSYLAARAMA GRELFEPRFG RGRIVNVSSR GAFRGEPKSP AYGASKAGLN ALSQSLAKAL
APQAVYVYCL APGWVETDMA ADHLTGPDGE AILADHPLGR VATVEEIART AAFCALDAPA
AMTGCIVDIN GASYLRT
|
|---|
| |