| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2000 |
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| Symbol | |
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| ID | 6208882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 2569614 |
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| End bp | 2571944 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641691650 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001818883 |
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| Protein GI | 182413817 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.597232 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.450618 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCACTCT CCCCGCCCAC CGTCCGGCCT TCGCTTCTCA CCGCGGCGGT GTGCTGCGTG
CTTTTCGCCT GCACCGTGCT GCTGTTCAGC CGCGGGCTGA GCTACGACTT CAGCAACTAC
GACGATCCCG CCTTCGTGAC GAACAACGTC CACGTTCAGG CCGGCTTCAC CAAGGAGAGC
CTCGCCTGGG CCTTCACCGG ACAGGCGGAC TACTGGCATC CGCTCACGTG GCTGTCGCAC
ATGCTCGACT GGCAGTTGTG GCGCGACAAC GCCGGCGGAC ATCACCTCAC CAGCGTCCTG
TGGCACGCGC TGAACGCCGT GCTCGCGTTC CTCGTGCTGC GGCGGTTGAC CGGCGCGCCG
TGGACGTCCG CGTTCGCGGC GGCCCTGTTC GCGTGGCATC CCTTGCGCGT CGAGTCGGTG
GTGTGGATCA CCGAACGCAA AGACGTGATG AGCGGCTGCT TTTTTCTGCT CACGCTCTGG
GCGTTCGCGG CCTATGCGCA GCGCCGTGAT GCTCACAGCG GCCGGTCCCT GCGTCCGTCG
CAAACCGACC CGCACGCCGT TCCGGCGGAG GCGCACCTGG GTGCGCCCTC GATCCCATCC
GCGCCTGCGC GCCCCTGGCC ATTTTATCTG CTCACGCTCG GGCTGTTTCT CGCCGGGCTG
ATGTGCAAGC CGATGCTCGT GACGCTGCCG GGCGTGCTCT TTCTACTCAA CGTCTGGCCG
CTGCGCCGCC TCGATCTGAG CGTGCTCGAT CGCGCCATGT GGCGCCGCAC CGGCCAGCTG
TTGTTGGAAC AGGTGCCGCT GCTCGCGCTC TCGCTCGCGA TCGCCACGGT GACCGTGCTT
ATGCAGCAGA CGCAGGGCGC GTTCGTCCTC GATTTGCCGT TCGGCGCGCG GCTCGGCAAC
GCGGTCGTGT CGATCGCCCG CTATCTCGGC AAGTTCCTCT GGCCGGCCAA CCTCACTGTC
TGCTATCCGC ATCCCGGTCA CTGGCCGTGG CTCGTCATCA TGGGCGCGAC CGCGCTCGTG
GTTGTCGTAA CCGCCGTCGC CTGGTGGCAG CGTCGCGCGC GGCCATGGGT ATTGGTCGGC
TGGGCCGGCT TTCTCGTCGC GCTGCTCCCC GCGCTCGGAC TCATCCAGGT CGGATTCCAA
GCGATGGCCG ACCGCTACAC CTACGCGCCG ATCCTGCTCC TGCAGCTCGC GCTGCTCTGG
ACTCTCGCCC CGCTGCTCGC CGCGCGACCG TTCGCGCGTA AAACCGCGGC GGTGACCGCC
GTCGCGGTAC TGCTCGGCGG TGCGATCCGC ACGTGGGAGC AACAAGCGGT GTGGCGCGAT
CCAACGACCC TTTTCCGGCA CGCGCTCGCG GTCACCGAGC GCAACGAGGT CGGACACGCG
CTACTCGCTT ACACGCTCGC GACGCAGAGC GAGTTGGAGG AAGCGGCCAT CCACAGCCGC
CGCGCACTCG AGCTGAATCC GCGCAACCGG ACGGCGCTGT TCACCCTCGC CAGCGTGCTC
GAACGTCAGG GCCACGCCGG CGACGCCGCC GAGCTTTACC GCCGCGTGCT GGAGCTGAAC
CCGAAGGACA GCGACACCGA GTATCGACTC GGATTACTCC TGCTGCGCCA GCGCGACCCC
GGGGCGCAGC AACATCTCCA CGCCGTGGGC CAGAGACATC CCGAGCTCGT GCAGCAACGC
ATCGCCGAAG GCATGGACCA CACGCTGCAC GGACGCGCAC ACCTCGGACT CGCCCAGTTC
GAGGTCGCGC TCGCGCTCAA TCCGGATGAA CCGGCCGCGC ATTTCGGCGC TGGGCTGGCG
CTGGCCCAGC TGGACCGCGA CGACGACGCG ATCACTGCGC ATCGCAACGC GCTCCGGCTG
CGCGCCGACT ATCCGGAAGC GCACACCGAA CTCGGTCTCC TGTTGCTCAG CCGCGGTGAG
CCCGCCGAGG CCGAGACGCA TTTTCGCGCC GCCCTCCGCT CCGCGCCCGA ACTCGCGACA
GCGCACCTCG GACTCGCGCG GGCGGCGGAG CAGCTGGGCC GGGCTGACGA AGCAACGGCG
AGTTTCACGC GCGCCGTGGA GCTGGCGCCC GACAGCCCGC TCGTGCAGCG AACGGCCGCC
CAGGCCTTCG CGCGGCGGCA GCAGTTCGCC GCCGCCGTGG AGCACTACCA GCGCGCCATC
GAGCTGCAGC CACAGGATGC CGCGCTTCGC GCCGAGCTCG GCTATGCGCT GATTCTCAGC
GGTCGCCGCG CGGATGGCAT TGCGGCGTGG AAAGCCGCGC TCGCGCTCGA CCCCACCCTG
CCCGGCCTGC GCGAGCGGCT CGACCGGCTC GAACGAACCG AGGCGCGATA G
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| Protein sequence | MSLSPPTVRP SLLTAAVCCV LFACTVLLFS RGLSYDFSNY DDPAFVTNNV HVQAGFTKES
LAWAFTGQAD YWHPLTWLSH MLDWQLWRDN AGGHHLTSVL WHALNAVLAF LVLRRLTGAP
WTSAFAAALF AWHPLRVESV VWITERKDVM SGCFFLLTLW AFAAYAQRRD AHSGRSLRPS
QTDPHAVPAE AHLGAPSIPS APARPWPFYL LTLGLFLAGL MCKPMLVTLP GVLFLLNVWP
LRRLDLSVLD RAMWRRTGQL LLEQVPLLAL SLAIATVTVL MQQTQGAFVL DLPFGARLGN
AVVSIARYLG KFLWPANLTV CYPHPGHWPW LVIMGATALV VVVTAVAWWQ RRARPWVLVG
WAGFLVALLP ALGLIQVGFQ AMADRYTYAP ILLLQLALLW TLAPLLAARP FARKTAAVTA
VAVLLGGAIR TWEQQAVWRD PTTLFRHALA VTERNEVGHA LLAYTLATQS ELEEAAIHSR
RALELNPRNR TALFTLASVL ERQGHAGDAA ELYRRVLELN PKDSDTEYRL GLLLLRQRDP
GAQQHLHAVG QRHPELVQQR IAEGMDHTLH GRAHLGLAQF EVALALNPDE PAAHFGAGLA
LAQLDRDDDA ITAHRNALRL RADYPEAHTE LGLLLLSRGE PAEAETHFRA ALRSAPELAT
AHLGLARAAE QLGRADEATA SFTRAVELAP DSPLVQRTAA QAFARRQQFA AAVEHYQRAI
ELQPQDAALR AELGYALILS GRRADGIAAW KAALALDPTL PGLRERLDRL ERTEAR
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