| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1901 |
|---|
| Symbol | |
|---|
| ID | 6207661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 2387542 |
|---|
| End bp | 2388795 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641691549 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001818784 |
|---|
| Protein GI | 182413718 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.637484 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATTC CGCGCCCCTC TCAAGCCAAA GCCAAGCTGA AGAAACGCAT CATCCTCGGC
TCCGTGGTCG CTTTGGCGCT CATCGGCATC ACGGTGCTTC TCGCCCGGCT AAAACCCGCG
GCGCCCACCG TCGAGCGCAA TCTCGTGTGG ATCGCCGACG TGAAACGCGG GCAGATGCTC
CGCCAGGTCC GCGGGCTCGG CACGCTGGTC CCCGAAGAGA TCACTTGGAT CGCCGCCCGC
ACCCAAGGCC GCGTCGACAA GATTGTTCTT CGTCCCGGCG CCACGGTCAC ACCCGATAGC
GTCATTCTCG TGCTCACGAA TCCCGATGTC GTGCGCGCCT CGGCCGACGC CGACTCGCAG
CTCCGCGCCG CTGAAGCCCA GCTGACGAAT CTGAAGGTCC AGATCGAGAG CAGCGTGCTC
GCGGCCGAAG CCGCCGCCGC CAGCGCCAAG GCCGACTTCG AGCGCTACCG GCTGCAAGCC
GAAGTGAACG ACGAACTCTT CAAAGACGGC TTGGTGTCGC CCCTCGACGT CCGCGTTTCC
AAGGTCACCG CCGAGCAAGC CGCCACGCGC TACACGATCG AACAAAAGCG CTATGCCTTC
ACGAAAGACT CCGTCGCTCC GCAGCTCGCG GTGCAGGAAG CCGAGGTCGA ACGCCTCCGC
AGCATGGCCA AGCTCCGCCG CGAAGAACTC GAAGCCCTCA CCGTGCGCGC CGGCATGAAT
GGCGTCCTCC AGATTCTGCC CGTAGATGTG GGCGCGCAGG TGCAGCCCGG CTCCAACCTC
GCCCGCGTGG CGGATCCACG CCGGCTCAAG GCTGAGATCC GGATCGCCGA AACGCAGGCT
CGCGACATCG AGATCGGCCA GGTCGCGCAG ATCGACACGC GCAACGGCGT CGTCGCCGGC
AAGGTCGGCC GCATCGATCC TTCCGTTCAG AACGGCACCG TCACCGTCGA CGTTTTCATC
ACCGACGAAC TGCCGCGCGG CGCCCGCCCC GATCTCTCGG TCGACGGCAC CATCGAACTC
GAGCGCTTGG AGAACGTCGT CTACGTCGGT CGGCCGGCCT TCGGCCAGGA ACAGACCACC
GTCGGCATCT TCAAGCTCGA CGAGAACAGC TCCTACGCGA CACGCACGCA GGTGAAGCTC
GGCCGCAGCT CGGTCAACAC GATCGAGGTG CTCGCCGGCC TCGAGCCCGG CGACCGCGTC
ATCCTCTCCG ACATGTCGCA GTGGGATTCC AACGACCGCG TGAAGTTGAA CTGA
|
|---|
| Protein sequence | MDIPRPSQAK AKLKKRIILG SVVALALIGI TVLLARLKPA APTVERNLVW IADVKRGQML
RQVRGLGTLV PEEITWIAAR TQGRVDKIVL RPGATVTPDS VILVLTNPDV VRASADADSQ
LRAAEAQLTN LKVQIESSVL AAEAAAASAK ADFERYRLQA EVNDELFKDG LVSPLDVRVS
KVTAEQAATR YTIEQKRYAF TKDSVAPQLA VQEAEVERLR SMAKLRREEL EALTVRAGMN
GVLQILPVDV GAQVQPGSNL ARVADPRRLK AEIRIAETQA RDIEIGQVAQ IDTRNGVVAG
KVGRIDPSVQ NGTVTVDVFI TDELPRGARP DLSVDGTIEL ERLENVVYVG RPAFGQEQTT
VGIFKLDENS SYATRTQVKL GRSSVNTIEV LAGLEPGDRV ILSDMSQWDS NDRVKLN
|
|---|
| |