Gene Oter_1895 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOter_1895 
Symbol 
ID6204939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOpitutus terrae PB90-1 
KingdomBacteria 
Replicon accessionNC_010571 
Strand
Start bp2373162 
End bp2375669 
Gene Length2508 bp 
Protein Length835 aa 
Translation table11 
GC content69% 
IMG OID641691543 
Productpermease 
Protein accessionYP_001818778 
Protein GI182413712 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID[TIGR03434] Acidobacterial duplicated orphan permease 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.88407 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACACG CGCTCCGCTC GCTCTTGAAG TCCCCCGGCT TCACCGCTCT CGCGATCGTC 
ACCCTCGCCC TCGGCATCGG GATGAACACC GCGATGTTCA GCATCCTGAA CGGCTTTCTG
CTCCGTCCCC TTTCGTATCC CCATTCTGAG CGGCTCTTCC AGCTCGACCG CCAGTCGCCG
CAGCAGCCGC ACGACGACCA TTCGCCGGCC AACGCCGCCG ACATCGTCGC CGCCGCGAGC
GACGTCGCCG ACCTCGCGAT GACGCGCTAC TGGGCCTTCA CGCTCACCGT TGCCCACCAG
GCGCCCGACG TGCCGATCGC GCTGCGCGTC AGCCCGAATT ATTTCGACGT CCTCGGCGTT
CGTCCCGCAC TCGGCCGCGT CTTTCGGCCC GACGAAAATA CGTCCGGCCG CAGCAATGTC
ATCGTCCTCA CGCACCGTTA TTGGCAAAAC CATTTCCAGG GTGCGCCCGA CATCGTGGGC
CGCACCGTCC GGCTCGACGG GACGCCGGTC GAGATCGTTG GCGTGCTTCC GCCCGACCCG
GATGAGGTCC GCCTCCTCGG CGCTGTCGGC TTTTATCGGC CGCTCGCGTT GTCCGACGCC
GAGCGCGCCA ACCGCAGCGA GGGCGGCCTC GGCTTGATTG GCCGCTACCG GCCGAACGTC
ACTCCGGAAC AAGCCGCCGA ACGCTTCGCG GTCATCGCCC GCCGCCTGGC CGCCGATCAT
CCTGCTGAAA ACGGCAACCT CCAGCTTGGG CTCCGGTCGC TGCAGTCCAC GCTGCTCGCC
GGCACCGGCC TGAACATGAC GCTCGTGCTG ATCGGCCTCT CCGGTTTCGT CCTGCTCATC
GCCTGCGCCA ATCTCGCGAA CCTACTCCTC GCCCGCGCGA TCTCCCGGGT CCACGAGTTC
TCCATCCGCG CCGCCCTCGG CGCCACCCGC GCTCAGCTCA TCCGGCCGCT CGCCCTCGAA
TGCCTCCTGC TGGCCACGGC CGGTGCGTCC GCCGCCCTCC TCGTGGCCAC CTGGACCAGC
GATTGGCTCA GCGCCCGCTT CGGCGGTCCG GACACGCCCG TGGACTTCTC CGCCGACCCG
CGCGTGCTCG CTTTCGCGCT CGCCGCCTCG GCGCTCACGG CGCTGCTCTT CGGCGTCGGT
CCGGCATGGT GGGCGGCGCG CGTGTCGGCC AACGACTCGC TGAAGGCCGG CGGCCGCGGC
GCCACCGGCA CCCGCACGCA GACGCGTTAC CGGCAGCTTC TCATCGCCAC CCAGTTCGCC
CTCGCCCTCA TGCTGCTTGC CGGCGCCATC TTTTTCGTGC GCGGGCTCGA GAAGCTCATT
GGCGCCCGCA AGGGTTGGAA CCCCATGCCC GTCGTTTCCG GCGTGATCAA TCTCGCCTCG
CCCACGCGTT TCGGCAGCGC CGAGCCGATC CTCGCGTTTC ACGCGCAGCT GCGCGATCGC
CTCCTCGCAC TGCCTGGCGT GAAGAACGCC TGCGTCAGCT TCGACCTGCC GCTGTTCAAC
TCCCCCTCGC GCCGCAACTT CCTCGTCGAG GGCCGACCTG CACCCGCGGC CGGCCAGGAG
ATCGCCGCCT TCACCAACGG CGTCTCGCCC GGTTTTCTCG ACACGATGGG ACTGCACCTC
CTCCGCGGCC GGTTCATCGA TAACACCGAC CGGCTCGGAT CCCGACCCGT CGTCGTGATC
AACGAGACCA TGGCCCGCAC GCTCTTCTCC GGGGAGGAGG CGGTCGGCCA CCGTCTGGCC
CAGGCTGGCG GTGACAAACC GGTGTGGGCG GAGATTGTCG GCGTAGTCGA GGACACCCGC
GCGCTCGACA TGGCGCCGTC CCCGGTGCGG TTCCAGGTCT ACAAGCCGTT CGCACACGAA
GCGTGGCAGT TCGTCACGAT CGCCGTGCGT GTCGCGGATC CCGCGAAGTC CGCCGCGCTG
CTCGAGCCGA TTCGCCAGAC GGTCGCCGCG CTCGATCCCG ACCAGCCTGT CCTGCGACTG
ATGACAGTGC CTCAACGGAT CGAAAGTAAT TTCAAGGTCT GGGAGACGAT CGATCGGCTG
CTCATGGTCT TTGCCGGACT CGGACTGTTG CTGGCTGCGC TGGGCATCTA CGGGGTGGTT
ACCCGCGTGG TGACGCAGCG CACTCCCGAG ATCGGCATCC GTCTCGCGCT CGGGGCGCAA
ATCCGCGACA TCGTCGGTCT CGTGCTCGGC GGCGGCGTCC GCCTGGCGTT CGCCGGCACG
CTCCTCGGTT CGATTGGCGC CGCGTGCTTG CTGCAGTTCA CCTCGCAGGC GCTTCCCGCG
TTCGGCCGCG TCGAGCCGGT TACGATCGTG CTCTCGGCGG TCGCCTTGGT CTCGTTGCCC
TGCTCGCCTG CCTGCTTCCG GCCCGCCGCG CTGCGCGCGT CGACCCTGCG GTGGCCTTGC
GGACCGAGTG ATCGCTGCCA CGAGCGGCGA TCCGCACGTC ATACCATGTT GGGAATGACG
TCGGCATCGG CTGATCGGTG CCGAACGTGG CGCAGCCCGG AGGGATGA
 
Protein sequence
MKHALRSLLK SPGFTALAIV TLALGIGMNT AMFSILNGFL LRPLSYPHSE RLFQLDRQSP 
QQPHDDHSPA NAADIVAAAS DVADLAMTRY WAFTLTVAHQ APDVPIALRV SPNYFDVLGV
RPALGRVFRP DENTSGRSNV IVLTHRYWQN HFQGAPDIVG RTVRLDGTPV EIVGVLPPDP
DEVRLLGAVG FYRPLALSDA ERANRSEGGL GLIGRYRPNV TPEQAAERFA VIARRLAADH
PAENGNLQLG LRSLQSTLLA GTGLNMTLVL IGLSGFVLLI ACANLANLLL ARAISRVHEF
SIRAALGATR AQLIRPLALE CLLLATAGAS AALLVATWTS DWLSARFGGP DTPVDFSADP
RVLAFALAAS ALTALLFGVG PAWWAARVSA NDSLKAGGRG ATGTRTQTRY RQLLIATQFA
LALMLLAGAI FFVRGLEKLI GARKGWNPMP VVSGVINLAS PTRFGSAEPI LAFHAQLRDR
LLALPGVKNA CVSFDLPLFN SPSRRNFLVE GRPAPAAGQE IAAFTNGVSP GFLDTMGLHL
LRGRFIDNTD RLGSRPVVVI NETMARTLFS GEEAVGHRLA QAGGDKPVWA EIVGVVEDTR
ALDMAPSPVR FQVYKPFAHE AWQFVTIAVR VADPAKSAAL LEPIRQTVAA LDPDQPVLRL
MTVPQRIESN FKVWETIDRL LMVFAGLGLL LAALGIYGVV TRVVTQRTPE IGIRLALGAQ
IRDIVGLVLG GGVRLAFAGT LLGSIGAACL LQFTSQALPA FGRVEPVTIV LSAVALVSLP
CSPACFRPAA LRASTLRWPC GPSDRCHERR SARHTMLGMT SASADRCRTW RSPEG