Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_1890 |
Symbol | |
ID | 6206155 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 2361021 |
End bp | 2363558 |
Gene Length | 2538 bp |
Protein Length | 845 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641691538 |
Product | permease |
Protein accession | YP_001818773 |
Protein GI | 182413707 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.485646 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTCATTC AAACGTTCTT CCAGGATCTG CGGATCGGTC TCCGCGTGCT CATCAAGGAA AAGAGTTTTT GCACGCTCGC CGTCACCGTC CTTGCGGTCG GTATCGGCGC CGTCACGTCG ATGTTCAGCG TCGTCAATGG CACGATGCTG CGCGGCTTTT CCTTTCCCAA CGCCGACCGG CTCGCCGGCG TTCAGGTGGT CGATCCGACG CAGTCGAATC CGTTCGGCTT CAACAGCCAG ATTTTCTCGC TCGATTACGA GGCGATGCGC GAGCAGCAGA CCTCGTTCGA GATGATGGCC GCGTTCATCA ACGGCGCGAC CGTCAACGTC ACCGCTGATG GGACGCCCAA GCGCTACACG GGCGCCTACG TCTCCGCCGA CTTTTTCCGG ATTCTCGGCG TGCGGCCGGT GATCGGCCGC GATTTCGCGC CGCGCGACGA TCAGCCGGGC GCGGAGAAGA TCACGCTGAT CAGCTACCAA CTCTGGCAGC GCGATTTTGG CGGCTCGCCC GAAGTGATCG GCCGCAGCAT CCGGATCAAC GGCAAACCGG CGACCATCGT CGGCGTGATG CCCCAGGGCT TCGCCTTTCC GGTGAACGAG GAGCTGTGGA TCCCGCTCTA CGCCGAGTAT CCGCCGACCC CGCGCAACAG CCCGAACGCG CAGGGCAATC AGCCGGGCGT GCTCGCGCTG CTCAAGCCCG GCGTCAGCTT CGACCAGGCC CAGGCCGAGT TCTCCGGCCT CGCCAAGCAG CTCGCCGCCG CGTTTCCCGA CACGAACAAG AAGTTCGACA CGGCGGTGAT CCAGCCGCTG ATCAAGACCT TCACGCCGCC CAACATCAAG GGCCTGCTCT GGACGATGCT CGGCTTCTGC GTCGGCCTGC TGCTCATCGC CTGCGTCAAC GTGATGAACA TGCAGTTCGC GCGCGCGACG CTGCGCGCGA AGGAACTCGC GATCCGCTCC TCGCTCGGCG CGACCCGGAT CCGGCTGATC CGGCAGATGC TGACCGAGTC GCTGCTCGTC GCCGCGCTCG GCGCCACTGT CGGCATCGGC CTCGCTTCGT GGGCGACGGG ATACCTCAAC GCCGCCACGC ACTCCGGCGA AAATCCCATT CCCGCCTACA TCGTATTCAA CATCGACGTG CCCGTGCTCG TCTTCGTGGT CAGCGCCACG ATGCTCGCGG CGCTCGTGTC CGGATTCGTT CCCGCGTGGA TGTCCTCGCG CGCCAGCGCC GTCGACGCGT TGAAGGAGTC CGGCCGGGGC AACACCAGCC GCGCCGTCAC CGTCATCACC CGCTCGCTGG TCGTCATGCA GATCCTCGTC AGCAGCCTCT TGCTGGTCGG CGCGCTGCTC CAGCTGAAAT CAATCCTGCG CCAGAACCAG ATCGCCTGGG GCTACGACAA CGGGGCGATC CTGAGCGCGC GACTCGCCCT GATGGAGGGC GACTATCCAA CGCCCGAGGC GCGAAAACTG TTTTTCGACC GGCTGCTCCG TGAGCTGCGC GCGAATCCCG AATACGAGGG CGCCGCCCTT ACCAACCGCT TCCGGATGAC CTTCTCCGGC TTTGGTCGCA TCGAGATCGA CGGCCGCGCC TACGCCAAGG ACGAGGACCG GCCGAACACC AACTTCGAGC AGGTGTCCGA AGGCTACTTC GAGACGCTCA AGGCGCGGAT CATCGAGGGC CGCGACTTCG CACTCGACGA CACCGATGCC AAGCAGCCGA TCGCCATCGT GAACGCTGCT TTCGCGCACA AGCACTTTGG CAATGAGAGC GCGCTTGGCC GTCGCTTCCG CACCGTCGGC AACAACGGCC AGCTGTTCGG ACCGTGGCGC ACGATCGTCG GCGTCGTCTC CAATGTCCGG ATGCTCGGGC CGTTCAACAA TCCGCAGGTG GACGACACCG GGTTCTACGT GCCGTATTTC TCGTCCGTCT TCGGTCCGGC CCTGCCCGGC CCGGTGCAGC AGCAGTTCGC CACCGTCATC GTGCGGCCGC GGGCTAACAA TGCCGCGGAC ATCGAGCGGC GCGCCGCCGT CCTGGCGACC ACGCTCCAAC GCGAGGTCAA CAAGGTCGAC GCCAACCTGC CGCTCTACTT CGTCGGCACC GCGCGGGTGA ACCAGGAGAG CTTCCTCGGC GTGAACCGGA TTATCGCCAG CATGTTCACG CTCTTCGGCG GCATCGCCGT GCTGCTCTCG TCGGTCGGCC TCTACGGCGT GATGAGTTTC TCCGTCAACC AGCGGATGCA GGAATTCGGC ATTCGCATGG CGCTTGGCGC CGACACCCAG CGGATCCTGC AGATGGTGCT CCGCCAGGGC GGCGTGCAGC TGCTCATCGG ACTGGGGGCT GGACTCGCAC TCACCGCCAC CGTCGCCGTG CTCGCCCGCG ACGGCATCGC CACGCAGCTG TTCGAGATCA GCCCGCTCGA TCCGCTCACC TACACGACCG TCGCGCTGCT GCTCACCGCC GTGGCGTTTG TCGCCACGCT CGTGCCCGCC CAGCGCGCCA CGCGCGTCGA CCCGATGACC GCGCTCCGGG CCGAGTAG
|
Protein sequence | MLIQTFFQDL RIGLRVLIKE KSFCTLAVTV LAVGIGAVTS MFSVVNGTML RGFSFPNADR LAGVQVVDPT QSNPFGFNSQ IFSLDYEAMR EQQTSFEMMA AFINGATVNV TADGTPKRYT GAYVSADFFR ILGVRPVIGR DFAPRDDQPG AEKITLISYQ LWQRDFGGSP EVIGRSIRIN GKPATIVGVM PQGFAFPVNE ELWIPLYAEY PPTPRNSPNA QGNQPGVLAL LKPGVSFDQA QAEFSGLAKQ LAAAFPDTNK KFDTAVIQPL IKTFTPPNIK GLLWTMLGFC VGLLLIACVN VMNMQFARAT LRAKELAIRS SLGATRIRLI RQMLTESLLV AALGATVGIG LASWATGYLN AATHSGENPI PAYIVFNIDV PVLVFVVSAT MLAALVSGFV PAWMSSRASA VDALKESGRG NTSRAVTVIT RSLVVMQILV SSLLLVGALL QLKSILRQNQ IAWGYDNGAI LSARLALMEG DYPTPEARKL FFDRLLRELR ANPEYEGAAL TNRFRMTFSG FGRIEIDGRA YAKDEDRPNT NFEQVSEGYF ETLKARIIEG RDFALDDTDA KQPIAIVNAA FAHKHFGNES ALGRRFRTVG NNGQLFGPWR TIVGVVSNVR MLGPFNNPQV DDTGFYVPYF SSVFGPALPG PVQQQFATVI VRPRANNAAD IERRAAVLAT TLQREVNKVD ANLPLYFVGT ARVNQESFLG VNRIIASMFT LFGGIAVLLS SVGLYGVMSF SVNQRMQEFG IRMALGADTQ RILQMVLRQG GVQLLIGLGA GLALTATVAV LARDGIATQL FEISPLDPLT YTTVALLLTA VAFVATLVPA QRATRVDPMT ALRAE
|
| |