| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1637 |
|---|
| Symbol | |
|---|
| ID | 6207601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 2011351 |
|---|
| End bp | 2012748 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641691279 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001818521 |
|---|
| Protein GI | 182413455 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCGG CTCTCCCCGC CTCCCAACCT GCGTCTGCGG CCCCGCGCAA GAAGTCGCGC
ATGAAATGGA TTATCCTCGC TGCGGTCGTG CTCATCATCG GCCTCGGCGT TGCCGCCAAG
TTCGCCAGTG CCAATCGGCA GCAGGGCGCG CTCGTCGTGA CCGAGAAGGC CGTCGTGAAG
ACGATCACGC AGCTCGTGAA CGCGACCGGC AAGATCCAGC CCGAAGTCGA GGTTAAGATC
TCGCCCGAGG TCTCCGGTGA AATCATCGAG TTGCCGCTGC GCGAAGGCGC GGTGGTGAAA
AAGGGCGACC TGCTCGTGCG GATCAAGCCG GACAACTACG TTTACCAAGT CGAGCAGCAG
GAGGCGAATC TCACGGCCGC CAAAGCCACC GCGGTGCAGA GCAAGGCCCA ACTGCTCAAA
GCCGAGGAGG ACTTCAAACG CAGCGACGAC TTGTTCAAGA AGCAGCTGAT CTCCGATTCC
GATTTCACCG CGATCCGCAC GTCACTCGAG GTGGCCCAGG CCAACTACGA CAACGCGCTG
GCGCAGATTC GCCGCACGGA AGGCCTGCTC AACCAGTCGC GCGAGCTGCT CTCGAAGACG
ACGATTTACG CGCCGATGGA CGGCACCATC AGCTCGCTCA CCAGTGAGAT TGGCGAGCGC
GTGGTCGCCA CGGGCAGCTT TGCCGGCACC GAGGTCATGC GCGTCGCCAA CCTCAACGAC
ATGGAGGCGC GGGTGAACGT GAATGAAAAC GACGTCGTCA ACGTGAAGAT CGGCGACAAG
GCGCGGATCA CGATCGACGC CTATCCGGGC CGCAAGTTCG TGGGCACGGT GAAGGAGATT
TCCTCGGCGG CGAAAACCCA AGGGCTCAAC ACGCAGGAGG AGATCACCAA TTTCCTCGTG
AAGGTCCGCG TCGGGGACAA GGACGTGAGC ATCCGGCCCG GCATGAGCGC CAACGTCGAC
ATCGAGACCA AGACGGTCGA GAACGTCGTC GCGGTGCCGA TTCAATCAGT CACCGTGCGC
AGCCGTGAGG GCAACAAGAC CATCGACGAG CTGAGTGCCG ATCGCGAGAA GAAGGCCAAG
GAGACGCAGG GCGACGGCGC CGCGACCGCG GTCAACGAAA AGCAGCAGCG CGACCGCGAG
CGCACCGACC GCGAAGGGCT GCAGCGGGTG GTGTTCCTGC GCACCGGCGA CACGGTGAAG
ATGGTGTCGG TCGAAACGGG CATCGCGGAC ACGACGCACA TGGAGATCAA GTCCGGGCTG
AAGGAAGGCG ACGAGGTGGT GACCGGGCCG TTCAGCACGA TCACGCGCAC GCTCAAGGAC
GGCGCGAAGA TCCGCCTCGA CAAGCCGAAG CCGGCGGCGG GCGCCGACAA GGCCGCGAAA
ACCGAGGCCA AAAAGTAG
|
|---|
| Protein sequence | MTSALPASQP ASAAPRKKSR MKWIILAAVV LIIGLGVAAK FASANRQQGA LVVTEKAVVK
TITQLVNATG KIQPEVEVKI SPEVSGEIIE LPLREGAVVK KGDLLVRIKP DNYVYQVEQQ
EANLTAAKAT AVQSKAQLLK AEEDFKRSDD LFKKQLISDS DFTAIRTSLE VAQANYDNAL
AQIRRTEGLL NQSRELLSKT TIYAPMDGTI SSLTSEIGER VVATGSFAGT EVMRVANLND
MEARVNVNEN DVVNVKIGDK ARITIDAYPG RKFVGTVKEI SSAAKTQGLN TQEEITNFLV
KVRVGDKDVS IRPGMSANVD IETKTVENVV AVPIQSVTVR SREGNKTIDE LSADREKKAK
ETQGDGAATA VNEKQQRDRE RTDREGLQRV VFLRTGDTVK MVSVETGIAD TTHMEIKSGL
KEGDEVVTGP FSTITRTLKD GAKIRLDKPK PAAGADKAAK TEAKK
|
|---|
| |