| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1625 |
|---|
| Symbol | |
|---|
| ID | 6205996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 1997221 |
|---|
| End bp | 1998534 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641691267 |
|---|
| Product | pyrimidine-nucleoside phosphorylase |
|---|
| Protein accession | YP_001818509 |
|---|
| Protein GI | 182413443 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0213] Thymidine phosphorylase |
|---|
| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTGT TTCCCCAACA CATCATTGCG CGCAAGCGGG ACGGCCACGC GCTGACGCGC
GAGGAGATCG GCGCGTTCGT GCGCGGCGCC ACCGACGGCA GCTGGGCGGA CTACCAGCTC
TCCGCGCTGC TCATGGCGAT CTTCCTGCGC GGGATGAACC GCGAGGAAAC CGTTGCCTAC
ACCGACGCGA TGATGCACTC GGGCGTCGTG GCCGATCTGT CGAATGTGCG ATCGCGCAAG
GCGGACAAGC ACTCGACCGG CGGCGTCGGC GACAAGATCT CGCTGCACCT CGCGCCGATG
GTCGCGGCAT GCGGCGTGGC GGTGCCGATG ATCAGCGGGC GCGGCTTGGG CCACAGCGGC
GGCACGCTGG ATAAGCTCGA GGCGATCCCG GGTTTCCGGG TCGGGCTCTC GATGAGCGAG
TATCGGGCGC AGGTGGAAAA GCTCGGGCTG TGCCTGATCG GGCAAACGGC GGAGCTGGCG
CCGTCGGACA AGAAGCTCTA TGCATTGCGT GACGTGACGG CCACGGTGGA GTGCATTCCG
CTGATCTGCG GGAGCATTCT CTCCAAGAAA CTTGCCGAGG GCATCGATGT ACTGGTGCTC
GACGTGAAGT TTGGCGCGGG CGCCTTCATG AAGGACAAGG CCGCCGCCCG ACAGTTGGCC
GAGACGCTGG TGTCGGTTGC CACTGCGATG GGCAAGCCGA CCCGGGCCGT GCTCACAGCG
ATGGAGCAAC CGCTGGGCCG CGCGGTGGGC AACGCGCTCG AAGTGATCGA GTCGATCGAG
TGCCTGCGCG GGGAGGGTCC GGAGGACACG ATGGAGGTCA CCTACGCGCT CGGGGCGCAG
ATGCTGCTGC TCGCGCGGGC GGCGAAGGAC GAGTCCGACG CGATGTTCCA GCTGCAGCGC
AGCGTGAAGA GCGGCGCGGC GCTGAAGAAG TTCGGCGAGA TGATCGCGGC CCAGGGCGGC
GACGCGCGCG TGGTTGAGGA TCTGAACCGG CTGCCGCGCG CACGGCTGAC GGAGTCGTTC
GTGGCGGTGC GCGGAGGATT TGTGCAGAAG GTCGACGCGA TGGGCGTCGC GCTGGCGGCG
CTGCGGTTGG GCGCCGGACG TGCGAAGGCC GAGGACAAGG TCGATCCGGG AGTCGGCGTG
AGCGGACTCG TGAAGGTCGG CGAGCACGTC GCGCCAGGCG CGCCGCTCGG CGTGATCCAC
GCGAATGACG AGCAGGCGCT GGCGGAGGCC GAGGAGATGC TGGCGAAGGC GATCGTGGTC
GGCGATCGGC CCGGCCCCGC GCCACGGCTG ATCGACGAGG TGATCGGCGC GTAG
|
|---|
| Protein sequence | MSLFPQHIIA RKRDGHALTR EEIGAFVRGA TDGSWADYQL SALLMAIFLR GMNREETVAY
TDAMMHSGVV ADLSNVRSRK ADKHSTGGVG DKISLHLAPM VAACGVAVPM ISGRGLGHSG
GTLDKLEAIP GFRVGLSMSE YRAQVEKLGL CLIGQTAELA PSDKKLYALR DVTATVECIP
LICGSILSKK LAEGIDVLVL DVKFGAGAFM KDKAAARQLA ETLVSVATAM GKPTRAVLTA
MEQPLGRAVG NALEVIESIE CLRGEGPEDT MEVTYALGAQ MLLLARAAKD ESDAMFQLQR
SVKSGAALKK FGEMIAAQGG DARVVEDLNR LPRARLTESF VAVRGGFVQK VDAMGVALAA
LRLGAGRAKA EDKVDPGVGV SGLVKVGEHV APGAPLGVIH ANDEQALAEA EEMLAKAIVV
GDRPGPAPRL IDEVIGA
|
|---|
| |