| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1622 |
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| Symbol | |
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| ID | 6208096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 1993001 |
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| End bp | 1995022 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641691264 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001818506 |
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| Protein GI | 182413440 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGC GCTTCTTTCG TTTCGCCCTC GTCTTGTCGC TAGGTGCCTT CGCGTTTTCC
CTCCATGCGC AGCAGCCGGA ACCCGCCGCC GGCCCTGCGG CGGCCGAGGA GATGGTCGGT
CCGATCAAGC TGCCGGATGC CGACATCGAC ACGGTCCTCG GGCTGCTCGA AATCTACACG
GGGCGCAGCA TCCTGCGTCC GCAACAACTC CCGACCGCCA CCTACCGGGT GGTGATCGAC
CGAAAGGTCA CCAAGTCCGA AGCGATCATG GCGTTGGAGA CGGCCCTGTC GCTCAACCAG
ATCGGCGTTG CCCCACTCGG CGACAAATTC CTGAAAGTCG TCGCGCTCTC CCAGGTGAAA
ACGGAGGCGC CCGAAATGAT CGAGGGCTCC ACGCTGGGGT TGGCGCCAAG TGGTCGCGTG
GCCACGAAGC TGTTCCAGCT CGATTTTCTG CGCGTCAACG AGTTCGTGCC GCAAATCACG
CCGCTGCTCA CCCCCGGCGT CGCCAACGGC GTGGTGCCGC TCGACAAGGC CAACGCCGCG
CTGATCACCG ACACCGTGAG CAACCTGCAG CGGATCGAGA TGCTCCTGCA GCAACTCGAC
AAACCCAGCA TGGCCGGGCT CACGCCGAAG TTTTACCAGC TCAACTTCAC CAAGGCCAGC
GACCTGGTCA CAAAGCTCCG CGGCATGTTC CAGGGCCCGC TGCAAAACCA GCTCGGCAGC
TCCATCAGCT ACAACGCCGA CGATCGCACC AACCAGGTCA TCCTGCTCTC GGATCCACGG
CAGCACCCGC TCTTCGACGA GCTGATCGCG AAGCTCGATG TCCGCGCCGA GCCGAACACG
CGCAACGAGG TCATCTACCT GAAGCACGCC TCTGCGAAGG ATGTCGCGCC GCTGCTCAGC
CAGCTGGTCT CCGGCCAAAA CACCGCCGCA CAGAAAGCCG CCGGCACCAG CGGCTCCGTG
CGCGCGCCCG TTCCTCAGCC CAATCAGCCG AACCAGGCCG CCACACCTGA CGCCGCGGTG
GCGCTCGCGG GTGCGACGGT GGATACCAAT GAATTCAGCA GCTACATCAC GATCCTGCCC
GACGAGCGCA GCAACTCGAT CGTGGTCTCG GGCACCGTCG ACGACATCCG GTTGATTCGC
GACTTGGTCG AGAAGGTGGA CATCCTCCTT GCCCAAGTGC GGATCGAGGT GATCATCGCC
GAGGTCACGC TGGATGACTC CAACAAAACG GGCCTCAGCG CGCTGAACCT CACCGTCGCC
ACGCCCCAAG GCAGCTCGCA GGGCACGCAC ATCACGAATT TCGCCGGCAA AGTCGCCGGC
TGGGACATCT CGCAGGGCGT GGTCAACCCG CTCGCGTTCC AAGCCGCGCT CGGCGACGCG
GGTACACGCA GCAACGTGAA AATCCTTTCG GCTCCCACGA TTGTCACGAC GCACAACAAG
GAGGCGCAGA TCCTCGTCGG CGAATCGCTG CCGATCATCA CCGGCATCTA CACCACCGCG
GTGGGCTCGA CCACGCCCAC GGAACCCGGC TTCGCGCAGA ACCAGCAGGT GACCTACAAG
GACATCGCCA TTGACCTCAA GGTCACGCCG CTCATCGGCG ACGACGGCAG CATCCAGCTA
AAGATCGACC AAAAGGTCGA CGACGTGGTC CGCACCATCT CCATCAACAA CAGCGACCAA
CCGGTCATCG GCCGGCGGCA GGCGACCTCG TTCATCAACG TGAGCGACGG CCAGATCGTC
GTGCTCGGCG GTTTACAGCG AACCGCAAAC ACCCGCGGCC GGAACAAGCT CGGATTCCTC
GTGGAGATTC CGATCCTCAG CCACTTGTTC GGCGCCCGGA CCAATTCCGT GCGACGCACG
GAACTGCTGC TCTTCATCCG CCCGCACGTG ATCGCGCCGG ACGCGGGCAC CGCGGATGCG
ACGAACACCA TCAATTCGCT CTCGAACAAG GAGCAGATCA ACCAGTACCT CAGCGATCCC
TCGAAGCAGC CGAAGGAAAA GCTGATCGAG AAACTGAAGT AA
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| Protein sequence | MSLRFFRFAL VLSLGAFAFS LHAQQPEPAA GPAAAEEMVG PIKLPDADID TVLGLLEIYT
GRSILRPQQL PTATYRVVID RKVTKSEAIM ALETALSLNQ IGVAPLGDKF LKVVALSQVK
TEAPEMIEGS TLGLAPSGRV ATKLFQLDFL RVNEFVPQIT PLLTPGVANG VVPLDKANAA
LITDTVSNLQ RIEMLLQQLD KPSMAGLTPK FYQLNFTKAS DLVTKLRGMF QGPLQNQLGS
SISYNADDRT NQVILLSDPR QHPLFDELIA KLDVRAEPNT RNEVIYLKHA SAKDVAPLLS
QLVSGQNTAA QKAAGTSGSV RAPVPQPNQP NQAATPDAAV ALAGATVDTN EFSSYITILP
DERSNSIVVS GTVDDIRLIR DLVEKVDILL AQVRIEVIIA EVTLDDSNKT GLSALNLTVA
TPQGSSQGTH ITNFAGKVAG WDISQGVVNP LAFQAALGDA GTRSNVKILS APTIVTTHNK
EAQILVGESL PIITGIYTTA VGSTTPTEPG FAQNQQVTYK DIAIDLKVTP LIGDDGSIQL
KIDQKVDDVV RTISINNSDQ PVIGRRQATS FINVSDGQIV VLGGLQRTAN TRGRNKLGFL
VEIPILSHLF GARTNSVRRT ELLLFIRPHV IAPDAGTADA TNTINSLSNK EQINQYLSDP
SKQPKEKLIE KLK
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