| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1589 |
|---|
| Symbol | |
|---|
| ID | 6204627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 1962478 |
|---|
| End bp | 1963101 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641691230 |
|---|
| Product | major intrinsic protein |
|---|
| Protein accession | YP_001818473 |
|---|
| Protein GI | 182413407 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.026297 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT ACCTCGTCGA GTTCATCGGC ACGTTCTTTC TCGTTTTCAC CGTCGGCCTG
GCCGTGCGCC AAGGCGCCGC GCTTGCCCCG CTTGCCATCG GCTCGGTGCT GATGGTGATG
ATCTTCGCCG GCGGACATAT CTCCGGCGGT CACTTCAACC CGGCCGTCAC GCTCGCCGCG
TTCCTGCGCG GCCGTTGCGA GCGACGCGAC GTGGTGCCCT ACTGGATCGC GCAGTTTCTG
GCCGGCCTCG TCGCAGCGCT GCTGGTAAAC GTCGTGCTCC AGGGCCGAGT CGACCCGAGC
GTGATCGCCC AGCACCCCCG GCTCGCCTCG TTCATCGTCG AGTTCCTCTT CACCTTCGCG
CTCTGCTGGG TGGTGCTCAA CGTCGCCACC TCGAAAAACA CCATGGGCAA CTCCTTCTAC
GGGCTCGCCA TCGGCTTCAC CGTGCTGGTG GGCGCGATCA CCGTCGGCGG CATCTCCGGC
GGCGCCTTCA ATCCCGCCGT CGGCCTCGGG GTGTTCACCA TGGGGCTCGA ATCGTTTGCC
CAGTTCGGCG TGTATTTGGT CTCCGAGTTC GCCGGCGCCG CCGTCGCGGC CCTGGCCTAT
CGGTTGATCA ACGGGCTCGA CTGA
|
|---|
| Protein sequence | MKKYLVEFIG TFFLVFTVGL AVRQGAALAP LAIGSVLMVM IFAGGHISGG HFNPAVTLAA
FLRGRCERRD VVPYWIAQFL AGLVAALLVN VVLQGRVDPS VIAQHPRLAS FIVEFLFTFA
LCWVVLNVAT SKNTMGNSFY GLAIGFTVLV GAITVGGISG GAFNPAVGLG VFTMGLESFA
QFGVYLVSEF AGAAVAALAY RLINGLD
|
|---|
| |