| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1553 |
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| Symbol | |
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| ID | 6206060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 1926848 |
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| End bp | 1928995 |
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| Gene Length | 2148 bp |
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| Protein Length | 715 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641691194 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001818437 |
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| Protein GI | 182413371 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCTC CTCGAGTCCT TCTCCTGATC GTGTCACTCG CCGCCAGCGG GTTGATCGCC
CCTGAAGTGG CCGAATTTCT CGTGCCGCAT GCGCACGCCG CGGAACAGCA ACTCTACACC
TGCGGCATGC ACCCGCAGGT GATCAAATCC GAGCCGGGCA ACTGTCCGAT CTGCGGGATG
AAGCTCACGC CGATTCGCGG CAACAACCCG GGCGCCGCCG CCACCGCAGG CGACCGCAAG
GTGAAGTTCT ACAAGTCCAC CATGATCCCG GGCGAGGTCA GCCCGAACCC GGGCAAGGAT
TCCATGGGCA TGGACAGGGT GCCGGTCTAC GAGGACGAAT TCGACGCCGC CAGCGCCATC
ACGATCGACC CGATCACGAT TCAGAAAATG AACCTGAAGA CGGCGCTGGT GCAGACCGGC
CCCGTCCGCC GCACCATCCG CGCCGTCGGC ACAGTGGGCT TCAGCGAGCC CGGATTGATC
GACATCACGA CGAAATACGA GGGCTGGATC GAAAAACTCT TCGTCAACGC CACCTGGACT
CGGGTGAAAG CCGGCACGCC GCTGTTCGAA ATCTACTCGC CCGATCTCTA CAACGCGCAG
CTCAACTTTC TCGTGGCGCT GCGCAGCGAA GGATCCGAGG GCGGGCCGCT GACCAACGCC
GCTCGCGCGC GGCTGCAGCT CTTCGACGTG CCGGCCGCGT TCATCACCGA ATTGGCGCAG
GCCGGAGAAG CCCGGCGCAA GGTCGTCTAT CGCGCGCCCG TCGACGGAGT GGTGATCGAG
AAACCGGCAG TGCAGGGCAT GATGGTCCGG CCCGGCGAAC GCATCTTCCG CCTCGCCGAC
CTGTCCACCG TCTGGGTCAA TGCGCAGATC TACGAAAAAG ACCTGGCGTT CGTCCACGAG
GGCCAGCACG CGGTGGTGCG CACGAGCTTC GGCCAGGAGC GCGAGTTTCA CGGCGAAGTC
GAAGTGCTGA TTCCTGAAAT CGTGAACGAG ACCCGCACGG CCCAGGCCCG GCTCGTGCTC
GACAATCCCG ACCGCGCGCT CAAGCCGGGC ATGTTCGTCG ACGTCCGCTT CGAGGCCGAG
CTCGCGCCGT CGGCGGTACT CGTGCCCGAT CTCGCGGTGC TGCGCAGCGG CGAACGCAAC
ACGGTGTTCG TCGCGCGTGA CGGCGGCACG TTCGAGGCCC GCGAGGTGAA ACTCGGCGCG
CGCACGCAGG ACAATTTCTT CGCGGTGCGC TCGGGCCTCG CCGCCGGTGA ACGCGTGGTC
ACGTCCGGCC AGTTCCTGCT CGATTCGGAG AGCCAGCTGC GCGCGGCCAT TCAGAAGATG
ATTCGCGCCA CGCAGGCCGG CGGCGGCACG GCGGCGGCCT CCACGCCCGC CGCCCAAGGT
GCCGGCTCCG GGCCTTCGTC ACCGCAACCT GCACCAGCGA CTGCCGCGGC GCCGGCGATG
CCGGCCGAGG CGCAGCCCGC GCTCAAGCAG CTCGCGTTCG CGAGCGCGGA TGCGGCGGCC
GCGCTCGCCG CCGACGACTT GAGCGCCTAC CGCCAACAGC TCCCGGCGCT GCGAACCGCC
GTCGCCGGGC TGGTCCAGGC CGCACCGCAA AGCGGCCTGG CCAAATACAA GGGCGCCCTG
CCGGAGCCGA CCGATCTGGA ATCGGCCCGC CAGGCATTCG AGCCGCTCAG CACCGCCGTC
GCGGATCTCG CTCGCGCCAG TCATCTCCAG CACACCGCCG GACTGCGGAT CTTCGAGTGC
CCGATGTCGC CCGTGCTCGG CAAGGCTCGC TGGCTCCAGC GCGAGAGCGG CACGAAGAAT
CCATTCTTCG GTTCGGACAT GCCACGCTGC GGCGAACAGA TCGACGGCCC TTCCGCGGCA
ACGGCGCCGT CCGCCGACGC CGGCATGAAA CTGCCGGCAG GTCACCCGCC CATCCGTCGA
CTCGCCGGAA CGAAGCCGCC GCGCGCCGCC ATGAGCGGGA GCGATTTTCT CCGTTCGCAA
ATCGGCGTGC CCGTCGCACT CGCCACGCCT GCGGATGAAA CGGCGCACGC GAGCGGCGGC
TGCCGCGGTT GCGGCATGTC GGCCGCGGCG ACGGCGGCCG GCGAACCCTG CGAACACGAG
GTTTTCCCCG CGAAAAACGC GGATGCGTCG CGACGCCCAA AGATCTGA
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| Protein sequence | MKSPRVLLLI VSLAASGLIA PEVAEFLVPH AHAAEQQLYT CGMHPQVIKS EPGNCPICGM
KLTPIRGNNP GAAATAGDRK VKFYKSTMIP GEVSPNPGKD SMGMDRVPVY EDEFDAASAI
TIDPITIQKM NLKTALVQTG PVRRTIRAVG TVGFSEPGLI DITTKYEGWI EKLFVNATWT
RVKAGTPLFE IYSPDLYNAQ LNFLVALRSE GSEGGPLTNA ARARLQLFDV PAAFITELAQ
AGEARRKVVY RAPVDGVVIE KPAVQGMMVR PGERIFRLAD LSTVWVNAQI YEKDLAFVHE
GQHAVVRTSF GQEREFHGEV EVLIPEIVNE TRTAQARLVL DNPDRALKPG MFVDVRFEAE
LAPSAVLVPD LAVLRSGERN TVFVARDGGT FEAREVKLGA RTQDNFFAVR SGLAAGERVV
TSGQFLLDSE SQLRAAIQKM IRATQAGGGT AAASTPAAQG AGSGPSSPQP APATAAAPAM
PAEAQPALKQ LAFASADAAA ALAADDLSAY RQQLPALRTA VAGLVQAAPQ SGLAKYKGAL
PEPTDLESAR QAFEPLSTAV ADLARASHLQ HTAGLRIFEC PMSPVLGKAR WLQRESGTKN
PFFGSDMPRC GEQIDGPSAA TAPSADAGMK LPAGHPPIRR LAGTKPPRAA MSGSDFLRSQ
IGVPVALATP ADETAHASGG CRGCGMSAAA TAAGEPCEHE VFPAKNADAS RRPKI
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