| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1546 |
|---|
| Symbol | |
|---|
| ID | 6204606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 1915961 |
|---|
| End bp | 1916647 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641691187 |
|---|
| Product | NADH dehydrogenase (ubiquinone) 24 kDa subunit |
|---|
| Protein accession | YP_001818430 |
|---|
| Protein GI | 182413364 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.334558 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.48465 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCGT CCCCCCCTCG TTCGAGCGAG GTTAGCGGAA CCCCCGAGTC CCGCCCGGTG
GCGGAATTTG ACGAGGCCGC GTTGCTCGGA CTCCTCGACG AAACCGAGAA AAAGCATGGA
TTTATTCCGC CGGAGATTTC CGAGGAAGTC GCCCGGCTGA TCGAAATCCG GCTCGAGCGC
CTGCGCCGCG TGCAAGGCAA GCTCGACTCC ACCATCCGCC GCGACGTGCA GCAGCACGTC
GCCCGGTGGC GCGACGAGGA GGGCAATCTC ATCATGATCC TCCATGCGAT CCAGAACCAG
CACGGCTACA TCCCGCGCGA GGTCGCCATG GAGCTGTCGC GCGAACTCGG CGTGAAGCTC
GCGCGGATCT ACGAGGTCAC CACCTTCTAC CATTACTTCA AGCTGCAGCC GCCCGGCGCA
CACAACGTCG TCGTCTGCAA TGGCACCGCG TGCTACCTCA AGGGCGCCGG TGACATCCTC
GGCGAATGCC GCAACCAGCT CGGCATCGCC GAGGGCCAGA CCAGCGCCGA CCGGCAGTTC
CATCTGGATA CCGTGCGCTG CATCGGCTGC TGCGGGATGT CGCCCGCCAT CGTGGTCGAC
GGCAAGACCC ACGGGCGCGT CAAGACCTCC GACGTCGCCG GCATCATCAA CGCCGTCCGC
AAACCCGCTC CCGCCGCCGC ATCATGA
|
|---|
| Protein sequence | MNASPPRSSE VSGTPESRPV AEFDEAALLG LLDETEKKHG FIPPEISEEV ARLIEIRLER
LRRVQGKLDS TIRRDVQQHV ARWRDEEGNL IMILHAIQNQ HGYIPREVAM ELSRELGVKL
ARIYEVTTFY HYFKLQPPGA HNVVVCNGTA CYLKGAGDIL GECRNQLGIA EGQTSADRQF
HLDTVRCIGC CGMSPAIVVD GKTHGRVKTS DVAGIINAVR KPAPAAAS
|
|---|
| |