| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1251 |
|---|
| Symbol | |
|---|
| ID | 6205323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 1541740 |
|---|
| End bp | 1543737 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641690892 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001818136 |
|---|
| Protein GI | 182413070 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACCCC TGCTCGCGCT GGTCACGTGC ATGTTCGCGC TTTCGGCGTC GGCGGCGACG
TGGACTGCTG ACAACGGCAA TGGCACGTTC ACCAATCCGC TGTTCTACGA CGAGTTTTCG
GATCCGGATC TGATCCGCGT CGGCGACGAT TTTTATCTGA CCGGCACGAC GATGCACGCG
CAGCCGGGGC TGCCGATCCT GCACTCGCGG GACTTGGTGA ACTGGCAGTT GCTCACCTAC
GCGTTCGAGC GGCTGGATCT CGGGCCCGCC TTCCGGCTGG AGGAGGGCCG CGAGAGTTAC
GGGCAGGGGA TCTGGGCGCC GTGTTTCCGG CACCACGGCG GCACGTTCTA CATTTTCTCG
AACGTCAACG GCCAAACCAC GCAGCTCTTC CGGGCGCAGA ATCCGGCCGG CCCGTGGACG
CGGACGCCGA TGAAGCGCGC GTTTCACGAT CTTTCCGTGC TCTTCGATGA CGATGGCAAG
GTGTATGTCA TCTGGGGGTA TCAGGACGTC CATTTCGCGC AGCTCGATGA GGCGTTGACC
GACATCGTGC CAGGCACCGA GAAAATCATC ATCCGCAAGG GCGCCGGTCT CGGCGAAGGC
CTGCATTGGT ACAAAATCGA CGGACGCTAC TACATCCTGA GCGCGTGGTT CGAGGGGCGG
ATGCGGATGC CGGCGGCACG AGCGGACCGG CCGGATGGCC CGTACGAGAT CAATCCGGCG
ATCAGCATGG ACGAGGACTT CGGGCTGGCC GAGGGCTATC GGTTGCGCAA CCGCAGCTTT
CCGTTCGAGA TCACGCCGCC GAACACCCGC GACGGCGGGC GCATGTCGCT GCATCAGGGC
GGCATCGTGA GCACGCCGGC CGGCGAGTGG TGGGGTTTTT CGATGATGGA CTACAATTCC
GTCGGACGGC TCACGTGTTT GTCGCCGGTG ACGTGGCAGG ACGGCTGGCC GTATTTCGGA
TTGCCCGGAA ATCTCAAGCG CACGCCGCGC ACGTGGATCA AGCCGGCGAC CGCTCATACG
AGCGCGCCGG CCGTCCCATA TCAGCGCGAC GACGATTTCT CCGGGCCGAA GCTCGCGAAC
GTGTGGCAGT GGAATCATGT GCCGATCGAC GATCGCTGGT CGCTCGCCGA GCGCGCCGGC
TATCTGCGGC TGCACGCGCT GCCGGCACCG GATTTCTGGT GGGCACGCAA CACGCTCACG
CAGCGCGCCA TTGGTCCGCA GTCGGTGCCG ACGGTGGCGC TCGACGTGAG CGGGCTGAAG
GCGGGCGACG TCGCGGGACT GGCGCTGTTG AACCTACCGT ATGCGTGGCT CGGCGTGCGC
AGCGACGGAG CCCGCCGGGA ACTCGTGCAG TTTGATCAGC TCACGGGCAA GAGCGTGACG
GTGCCGTTGG AGCGCGATCG CGTATGGCTG CGTGCGAGCT GCGATTTCCT GACGGAGCAG
GCGGTGTTCA GCTACAGCGT GGACGGCAGT GCGTTCACGC GGATCGGCGA CGAATTTACG
ATGATCTTTC AGCTGAAAAC CTTTCAGGGC GTGCGCTACG CGCTCTTCGC CTACAACACG
AGCGGCGCGA CCGGCGGGCA CGCGGACTTC GATCGCTTTA CGGTCGACGA GCCGCATCCG
CGTGGGCTGA TGCGCCCGAT TCCGGCGAGC CGGACGATCA CGCTAACGCC GGTCGGCGTC
GAAACGGCGG TTGCGATCGA CGGCGCCAAT CGGTTCGAAG TGGTGGCGCG CGAGCTCGGC
CGCGTGGCGC TGCGCGCGGG CGAACGTTAC GTGTCGGTGA ACGCCGACGG GCAACTCACG
CTGAAGAAGG GCGAGCCCGC GGACAGCGAG TTGTTCCAGT GGACGGAGAA CGTTTATGGC
GATCTGAACC TGCTGTCGCT TACGACGCAT CGTCACGTCC GTTTCGATGC GGCGCGCGGC
CTGGTGTTCG CTGATTCGCC GGGACCGAAG CCGGATCGCC ACGACGGCTC GTGCCTCGTG
TGGCGCTACG CCGAGTGA
|
|---|
| Protein sequence | MRPLLALVTC MFALSASAAT WTADNGNGTF TNPLFYDEFS DPDLIRVGDD FYLTGTTMHA
QPGLPILHSR DLVNWQLLTY AFERLDLGPA FRLEEGRESY GQGIWAPCFR HHGGTFYIFS
NVNGQTTQLF RAQNPAGPWT RTPMKRAFHD LSVLFDDDGK VYVIWGYQDV HFAQLDEALT
DIVPGTEKII IRKGAGLGEG LHWYKIDGRY YILSAWFEGR MRMPAARADR PDGPYEINPA
ISMDEDFGLA EGYRLRNRSF PFEITPPNTR DGGRMSLHQG GIVSTPAGEW WGFSMMDYNS
VGRLTCLSPV TWQDGWPYFG LPGNLKRTPR TWIKPATAHT SAPAVPYQRD DDFSGPKLAN
VWQWNHVPID DRWSLAERAG YLRLHALPAP DFWWARNTLT QRAIGPQSVP TVALDVSGLK
AGDVAGLALL NLPYAWLGVR SDGARRELVQ FDQLTGKSVT VPLERDRVWL RASCDFLTEQ
AVFSYSVDGS AFTRIGDEFT MIFQLKTFQG VRYALFAYNT SGATGGHADF DRFTVDEPHP
RGLMRPIPAS RTITLTPVGV ETAVAIDGAN RFEVVARELG RVALRAGERY VSVNADGQLT
LKKGEPADSE LFQWTENVYG DLNLLSLTTH RHVRFDAARG LVFADSPGPK PDRHDGSCLV
WRYAE
|
|---|
| |