| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1234 |
|---|
| Symbol | |
|---|
| ID | 6205162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 1524681 |
|---|
| End bp | 1526237 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641690875 |
|---|
| Product | putative circadian clock protein, KaiC |
|---|
| Protein accession | YP_001818119 |
|---|
| Protein GI | 182413053 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0467] RecA-superfamily ATPases implicated in signal transduction |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA GAGCTGACCG CAGTTCCCGC ACGGTGCCCA CCAAACCTCG TCCCGCGGGC
AAAGTCGCCA TTCGGCAGCT GCCCACCGGC GTGCGCGGAC TCGACGAGAT TCTCGGCGGC
GGACTGCCGG AGTATTCGTT CAACCTGATT GCCGGCACGC CGGGCTGCGG GAAAACGACG
CTCGCGCATC AGATCGCCTT CGCCAACGCG ACGGCGGAGC GGCCGGCGCT CTATTTCACC
GTGCTCGGCG AACCCGCGCT CAAGATGCTG CGCTACCAGC AGCAGTACTC GTTCTTCGAC
GAGACGAAGA TGGGGACGGC GATCCGCTTC ATCAACCTGA GCGAGGTGCT GCTCGAACAG
GATCTCGACG GCGTGTTGAA GGAGATCACC CAGCAGGTGG TGGCGGCCAA CCCCGGCGTG
GTCGTGGTGG ATTCGTTTCG TACGGTGTTG CGCAAAATCC CGGCGCACGA CGGGGCCGAA
ATGGAGCTGC AGGCGTTCGT GCAGCGGCTC GCGATGTTGC TGACGAGTTT CCAGGCGACC
ACGTTCCTGG TGGGCGAATA CACGGAGGGA GAGATGCGCG ACAACCCGGT CTTCACGGTG
GCGGACGGGC TGCTGTGGCT GTCCCAGATC GTCGAGCGGA ACTCCGTGGT GCGAAAGCTC
CAGGTCATCA AGCTGCGCGG CCAGGCGTCG GTGCCGGGCC TGCACACGTT TCGGATCGGG
AGTTACGGGC TGCAGGCGTT TTCGCGGACG ATGGGCTTGG TCGGGGCCAA GGGGAAACGC
TCGGGCAACC GGCGGCTCTC GGTGGGTGTG GTCGAATTGG ACACGCTGAT GGGCGGCGGC
ATCCTCGAAG GTGACAGCGT GCTGATCGCC GGTCCGTCGG GCACGGGGAA GTCGGTGCTG
GCGACCCAGT TCATCGACAC GGGCCTGCAG GCTGGCGAGG CGGGCATCAT CGTGGTGTTC
GAGGAGCGCC CGGCCGGGTA CGCGCGCCGC GCGGCCAGCC TGGGCCTGAA TTTCCAGCCG
GCGCTCGACG CCGGCACCCT CGAAATTCTT TACCTGCGGC CGCTGGACCT GTCGGTGGAC
GAGACGATGC AGGAGATCCT GGACGCCGTG AAGCGGACGG GAGCGCAGCG ACTGGTCATC
GACTCGCTCG TCGGCTTCGA GATGGCGCTG GCGCCCGGCT TCCGTGCCGA TTTTCGCGAG
TCGCTCTACC GGATGATCGC GGCGCTCACG GGCGCTGGCG TCACCGTCCT GAGTACCGTG
GAGATCGAGG ACTCGTTCAC CTCGTTCCAA TTCAGCCATT ACGCCATTTC GTTCCTGACC
GACGACATCA TCCGCCTGCG GTACGTCGAG ATTGACGGAC AGCTCAGGAA GATTCTCGCC
GTGGTGAAGA TGCGCGGTGG CAATCACAGC AAGGACATTC GCGAGTACGT CATCAGCGAA
ACGGGCCTGC TGCTCGTGAG CCCCCGGCAC ACCGATTACA CGGGTCTGAC CGGAGGTTTG
CCACAGCGAG TGGGAGCGCG AAAAGAGCAG GCTCCGGAAC CGAAGGCCAG CCGCTGA
|
|---|
| Protein sequence | MKKRADRSSR TVPTKPRPAG KVAIRQLPTG VRGLDEILGG GLPEYSFNLI AGTPGCGKTT
LAHQIAFANA TAERPALYFT VLGEPALKML RYQQQYSFFD ETKMGTAIRF INLSEVLLEQ
DLDGVLKEIT QQVVAANPGV VVVDSFRTVL RKIPAHDGAE MELQAFVQRL AMLLTSFQAT
TFLVGEYTEG EMRDNPVFTV ADGLLWLSQI VERNSVVRKL QVIKLRGQAS VPGLHTFRIG
SYGLQAFSRT MGLVGAKGKR SGNRRLSVGV VELDTLMGGG ILEGDSVLIA GPSGTGKSVL
ATQFIDTGLQ AGEAGIIVVF EERPAGYARR AASLGLNFQP ALDAGTLEIL YLRPLDLSVD
ETMQEILDAV KRTGAQRLVI DSLVGFEMAL APGFRADFRE SLYRMIAALT GAGVTVLSTV
EIEDSFTSFQ FSHYAISFLT DDIIRLRYVE IDGQLRKILA VVKMRGGNHS KDIREYVISE
TGLLLVSPRH TDYTGLTGGL PQRVGARKEQ APEPKASR
|
|---|
| |