| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1170 |
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| Symbol | |
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| ID | 6206829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 1461294 |
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| End bp | 1462940 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641690813 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001818058 |
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| Protein GI | 182412992 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.591559 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTCCA CCGAGTTCAA TGTACGCGAC TTCGGCGCCC AAGGCGACGG CGTCACCCTT
GATTCGCCAG CGATCAACGC GGCGATCGCC GCGGCGGCCG CCGCGGGCGG CGGCACGGTG
CGGCTGCCGG CGGGTACGTA TCTGAGCTAC TCGATCCGGC TGCGGAGCCA GCTCACGCTG
CACCTGGACG CGGGCGCGAC GCTGCTCGCG GCGACACCCT CGGCGGGAGC CGGGGGCTAC
GATGCGCCCG AGCCCAACGA TTGGGGCGAC GTACGGCAGT ATCAGGATTT CGGCCACAGC
CACTGGCACA ACAGCCTGAT CTGGGGCGAG GGTTTGGAAA ACATCGCGAT CACCGGCACC
GGCCGGATCG ATGGGCGCGG CCTCGTGAAG AACCTCGCCT ACGGCGGCGG GCCGCGCGAC
TGCGGCCCGG ACGGCACCGT GGATGAGGGC GCACGGCCGC CGATCGTGTT TGCGCCCGAC
CCGATCCCGG CGGGCGCCCC GGAGCCGGCG CCGGATCCGC GGCTTGCGGA TCCGCATGCC
ACCGACGGCT ACGCGAACAA AGCCATCGGC CTGAAGCTTT GCCGCAACGT GACGCTGCGC
GATTTCTCCC TCCTGAATGG CGGCCATTTC GCGCTGCTCG CGACCGGTGT CGACAACCTC
ACGATCGATG GACTGCGCGT GGATACCAAC CGCGACGGAC TGGACATCGA CACGTGCCGC
AACGTCCGCA TCATCAACTG CAGCGTCAAC GCGCCGAACG ATGACGCGAT CGTGCTGAAG
AGCAGCTATG CCTTGGGTGA GGCGCGGCCG TGTGAGAACG TCACGATCGT GAACTGTTTC
GTCAGCGGGT TCGACATCGG CTCGCTACTC GACGGGAGTT TTCGCCGCAC GCTCCGGCAT
GCCCCGGACC TCGACGGCCC CACCGGCCGG ATCAAGCTCG GCACCGAGTC GAGCGGCGGG
TTCCGCAATA TCGCGATCGT CAACTGCGTG TTCGAACGAT CGCGCGGGCT GGCCCTCGAG
ACGGTCGATG GCGGCGTGAT CGAGGATGTC GTCGTGTCGA ACCTGGCCAT GCGCGAGATC
GCGAACGCGC CGATTTTCCT GCGGCTCGGC GCGCGCGCGC GCGGCCCGAA GGGCACACCG
GTGGGAGCAA TCCGGCGCGT GCAGATCAGC CAGGTGAGCG TGAGCGGCGC CGACGGACGG
TTTCCGATCC TGCTCGCAGG GTTGCCCGAC CATCCGATCG AAGACGTCGT GCTCGACGGT
GTGCAGGTGC AGTCTCGCGG CGGGATCACG CTCGAACAGG TGCGCGCGCA ACCGGCCGAG
CTGGTGAACA GCTTCTTCCT GCGCGGCGAC GAACCCGGCG TCACCGGTCC ACGCGAGCCG
CTCGCGGTGC CGTTGCGGGC GAAGAGTTAT CCCGAGCCGA GTATGTTCGG CCTGCTGCCA
GCGTCGGCGC TCTACGCGCG CGACGTGAAA AACCTGACGG TGCGGGACGT GAGTTACGGC
TTCGCGCGCG AGGACGCTCG CCCGCGCGTG GTACTGGAGC GCGTCAGCCT CTCAGCGTTC
GACGGCTTCC GTGCAGCAGC GCCGACGCAA GGCGAAGCGG TGGTGTTGCG CGACGTGTCC
GGCTGGCCCG CGCGTCCATC CACCTAG
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| Protein sequence | MSSTEFNVRD FGAQGDGVTL DSPAINAAIA AAAAAGGGTV RLPAGTYLSY SIRLRSQLTL
HLDAGATLLA ATPSAGAGGY DAPEPNDWGD VRQYQDFGHS HWHNSLIWGE GLENIAITGT
GRIDGRGLVK NLAYGGGPRD CGPDGTVDEG ARPPIVFAPD PIPAGAPEPA PDPRLADPHA
TDGYANKAIG LKLCRNVTLR DFSLLNGGHF ALLATGVDNL TIDGLRVDTN RDGLDIDTCR
NVRIINCSVN APNDDAIVLK SSYALGEARP CENVTIVNCF VSGFDIGSLL DGSFRRTLRH
APDLDGPTGR IKLGTESSGG FRNIAIVNCV FERSRGLALE TVDGGVIEDV VVSNLAMREI
ANAPIFLRLG ARARGPKGTP VGAIRRVQIS QVSVSGADGR FPILLAGLPD HPIEDVVLDG
VQVQSRGGIT LEQVRAQPAE LVNSFFLRGD EPGVTGPREP LAVPLRAKSY PEPSMFGLLP
ASALYARDVK NLTVRDVSYG FAREDARPRV VLERVSLSAF DGFRAAAPTQ GEAVVLRDVS
GWPARPST
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