| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1134 |
|---|
| Symbol | |
|---|
| ID | 6205241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 1412543 |
|---|
| End bp | 1413427 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641690777 |
|---|
| Product | 6-phosphogluconate dehydrogenase NAD-binding |
|---|
| Protein accession | YP_001818022 |
|---|
| Protein GI | 182412956 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.37376 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCCCA AAATTGGTTT TGTCGGAGTC GGCCGGATGG GCGCCGCGAT GGCGCGCCGG
CTGCATGAAT GCGGGTTGCC CGTGGCGGCG GTTTACGACG TGCGGCCGGA CGCGGCGCGA
TCGCTCGCGG CGGAACTGGG CGCCACGGCC GCGGACACGC TGGCCGCGGT GACCGCGGCA
GCAGAGGTGA TCATCACCGT CGTCAGCGAC GACGCGGCGC AGCTGGGCGT GTTCGCCGAG
ACCGGCGACA GCCTGCTGGC GGGCGCCCGC GGCAAGGTGT TCGTGAACTG CGCGACGCTG
TCGCCGTCGA CGCACGTGGA GGTGGAGCGA CGTGTGCGGG CGGCTGCGGG CGCTTCGCTC
GAAGCCTGCA TGGCCTCGTC GATCCCGCAG GCGCGCGCCG GCACGTTGTA TTTGATGTGC
GGCGGCAGCC GCGAGGTGTT CGAGCGCGTG AAGCCGGTGC TGGAAAAACT CAGCGCCGAG
CCGCGCTACA TCGGCGCGAC GGGTCAGGCG GCGCAGGTGA AGGCGCTGGT GAACATGGTC
ATGAATATCA ACACGGCGGC GCTGGCGGAA GGGCTCGGAC TCGGCGCGGC GCTGGGCCTC
GAGCTCACGC TGCTCCGCGA AGTTTTCGCA CAGACGGGCG CCGCCTCGCA GGTGCTGAAG
ACCGACGGCG AGGATATGCA ACAGCGCGCG CATGATTGCT TCTTTTCGGC GGCGCATGCG
GCGAAGGATA GCGGGATCGC CTGGCGGCTT GGTTGCGAGG CCGGGCTGCA CCTCCCGCTC
GCGGCGGCGA CAAAGCTGCA GTACGAGCGG ATGATCGCGC TGGGACTCGG CGAACTCGAC
AAGAGCGGCG TGGCGGAGCT GACGTTCAAA GGCCGGCACG GGTGA
|
|---|
| Protein sequence | MLPKIGFVGV GRMGAAMARR LHECGLPVAA VYDVRPDAAR SLAAELGATA ADTLAAVTAA
AEVIITVVSD DAAQLGVFAE TGDSLLAGAR GKVFVNCATL SPSTHVEVER RVRAAAGASL
EACMASSIPQ ARAGTLYLMC GGSREVFERV KPVLEKLSAE PRYIGATGQA AQVKALVNMV
MNINTAALAE GLGLGAALGL ELTLLREVFA QTGAASQVLK TDGEDMQQRA HDCFFSAAHA
AKDSGIAWRL GCEAGLHLPL AAATKLQYER MIALGLGELD KSGVAELTFK GRHG
|
|---|
| |