| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0922 |
|---|
| Symbol | |
|---|
| ID | 6206244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 1134335 |
|---|
| End bp | 1135705 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641690545 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001817810 |
|---|
| Protein GI | 182412744 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.837868 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACGCC GCGCGTTGTC GTTATTCACC TGTGTGTTGC TCGCTTGGGT GACCTGGATC
CCGGCGCTGA CCGCCCAGCC CACTGAACCG ACTCCGCCGC CGCAACAGTC GGCGAACCAG
GCCGAGCAGG CGGCCGCGAA GGCGGATGAA GCGGCGCAGA ACGCCACCAA AGCGGCCGCG
GCGGTCACCG TGCAGCGTCA ACGCGCGCCG GAGCAGCCGG ACTTTCTCGA GCACCTGGTC
GATCAGAGCC TCGAGCTGTT CGACGTTCGC ACCAGCGAGA ACACCACGGC CCATTTCGTG
ATCGCCTGCT TGTTTCTCGT GCTGGCGTTG CTGGCGCGGC GAATCACGAC CGGCTGGGTG
TTCGTGGTGT TGAAGCGGCT CGCCGCGCGC ACGGCAACCA CGCTCGACGA CAAGATGTTT
CCCGCTTTGG AGGCGCCGGT CTCCACGTTC ATCGCGCTGG TCGGAATCTT TGCCGCGCTG
GCGGTGCTGA AGCTGCCGGC GACCACCGAC ACCGCCCTCA GCTACGGGCA GACCATCGCG
TTCTCGCTGG TGGTGTTCTG GGGCCTGCTG CGCGCTTTCG GCGCGCTGCT CGACCACGTG
CAGGAAATTT CCGTCAAACG CGGTATGGGC GTCGCCGCCT TCATGCCGTG GATCAAGAAG
ACGTTGATCA GCGTGTTCGT CGTGGTGGGC GTGCTCATGG TGGTGCAGAG CCTCGGCTAC
GACGTGAAGG CGCTGCTCGC GGGCCTCGGC ATCGGCGGTC TGGCGTTCGC CCTCGCGGCG
CAGGATACGC TGGCCAACGT CTTTGGCTCG ATCGTCGTAG CCATCGACCA GCCCTTCAAG
CTCGGCGAGT TCGTCGACAT CGGCGGCCGG GCGGGGACGG TCGAGGACAT CGGCCTCCGC
TCGACGAAAT TGCGGCGCGC CGACAAGGCG TTGATCGTCG TGCCCAACAA GACGGTGGCC
GCGGAATCGA TCTTGAACCT GTCGCGGTTC ACCGGTCGTC GCGCGGAACA GGTGCTGAAC
CTCACCTACG ACACCAAGCC CGAGCAGATG CAGGCGCTCG TCGAGGAGAT CCGCACGCTG
CTCAAGAGCG AGTCCTACAT CGATCCCTCG TCCGTGCTCG TCTACTTCCG CGACCTCAGC
GCCTCGTCAC TCGACATCTG GATCGCGTAC AACACGCGGG ACGGCGATTT TGGAAAACAC
ATGGAGCTGC GGCAGAGGAT GAACCTGGAG TTCATGCGCC GCGTGGCGGC GCGCGGCCTC
GCGTTCGCGT TCCCGACTCA GACGGTGCAG CTCGAGGGCG AGGTCGCGCG AAAGCTCGCG
GAGCGCCCCG CCGGCCCGCC GGCGGCGGCT CCTGAGCAGC CGCGTGGCTA G
|
|---|
| Protein sequence | MRRRALSLFT CVLLAWVTWI PALTAQPTEP TPPPQQSANQ AEQAAAKADE AAQNATKAAA
AVTVQRQRAP EQPDFLEHLV DQSLELFDVR TSENTTAHFV IACLFLVLAL LARRITTGWV
FVVLKRLAAR TATTLDDKMF PALEAPVSTF IALVGIFAAL AVLKLPATTD TALSYGQTIA
FSLVVFWGLL RAFGALLDHV QEISVKRGMG VAAFMPWIKK TLISVFVVVG VLMVVQSLGY
DVKALLAGLG IGGLAFALAA QDTLANVFGS IVVAIDQPFK LGEFVDIGGR AGTVEDIGLR
STKLRRADKA LIVVPNKTVA AESILNLSRF TGRRAEQVLN LTYDTKPEQM QALVEEIRTL
LKSESYIDPS SVLVYFRDLS ASSLDIWIAY NTRDGDFGKH MELRQRMNLE FMRRVAARGL
AFAFPTQTVQ LEGEVARKLA ERPAGPPAAA PEQPRG
|
|---|
| |