| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0859 |
|---|
| Symbol | |
|---|
| ID | 6207820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 1059338 |
|---|
| End bp | 1060513 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641690482 |
|---|
| Product | 3'-5' exonuclease |
|---|
| Protein accession | YP_001817747 |
|---|
| Protein GI | 182412681 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCTC GTTTCTTGCC GCTCCCCGTC CGCCGCTTAT TTGGAGTCAA AGTGACCTCC
CGACCGCCCG AATACGTCCT CATTGACCAA CCCGGCCAGC TGGCGCCTTT GCTGGCGGCC
CTCGATCGCG TCGACGAGGT CGCGCTGGAT ACGGAGGCGG ACAACATGTT CCATTACCGC
ACCCGGGTCT GCCTGCTCCA GTTCCTGGTC GGCAGGGAGA TCTTCCTCGT GGACGTCCTC
GCACCGCTGC CGTTCGAAGG GCTGTGGGCG CGGCTGGCCG AAAAAAACCT GATCATGCAC
GGCAGCGATT TCGATCTGCG GTTGTTGCAT GATTTTTGCC GGTTCCGACC GAAAAGCATC
TTCGACACGA TGCTGGCGGC CCAGCTGATC AACCGGCCGC GCATCGGGCT GGCCTCGCTG
CTCGAGGATC ACTTCGGCGT GAAGCTCTCG AAGGAGTCGC AGAAGGCCAA CTGGTCGAAG
CGGCCGCTCA CGAAAAAGAT GCTCGATTAC GCGGCGCTCG ACGTGTTCCA CCTGCCGGCG
CTGCGCGACA TCCTCACCCG CGAGCTCACG AAGCTCGGCC GGATCGAGTG GCTTCGCCAA
CAGTGCCGGG CGCAGATTGA AGCCGGCTCG ATCGGATTTG CGCCACCCGA CGAAAACGAC
TGGCGGATCG GCCGCAGCGA AAAACTGCGC GGCCCCGGGC TCGGTGTGTT GCACGCGGTG
TGGCACTGGC GCGAGCAAAC CGCGCAGCGG CTCGACGTAC CGCCGTTCAA GGTCTGCAGC
GCTGACCTGC TCCTACGGCT CGCGCAGGCT GCCGAAAACG GCGACGCCGA AGCGGCGATT
CTCGCGAGCG TTCACCTCGG CCGCCGTCAC GACCGGCTGT TGCCGTCGCT GACCGCCGCC
GTGCACGCCG GGCTCGCCCG CGATCCGAAA ACGCTTCCGC GCCGCCGCGG CCGCGATCCG
AATCACGTTG CGCTCACGCA AGCCGAGATC GAGCGGCTCG ATCGGATCAA GGACGACCGC
GACCGCATCG CAGCCAAGCT CCAGCTCGAG CCCACGCTGA TCGCCAACCG TTCCCAGCTC
GCGCAGATCG CGCGAGCGCC CGACCGGCTC GACGACCTGC TGCTCCCCTG GCAGGCCGAG
CTGCTCCGTG ACCAGCCTTC GTTCAAGGCG AGCTGA
|
|---|
| Protein sequence | MISRFLPLPV RRLFGVKVTS RPPEYVLIDQ PGQLAPLLAA LDRVDEVALD TEADNMFHYR
TRVCLLQFLV GREIFLVDVL APLPFEGLWA RLAEKNLIMH GSDFDLRLLH DFCRFRPKSI
FDTMLAAQLI NRPRIGLASL LEDHFGVKLS KESQKANWSK RPLTKKMLDY AALDVFHLPA
LRDILTRELT KLGRIEWLRQ QCRAQIEAGS IGFAPPDEND WRIGRSEKLR GPGLGVLHAV
WHWREQTAQR LDVPPFKVCS ADLLLRLAQA AENGDAEAAI LASVHLGRRH DRLLPSLTAA
VHAGLARDPK TLPRRRGRDP NHVALTQAEI ERLDRIKDDR DRIAAKLQLE PTLIANRSQL
AQIARAPDRL DDLLLPWQAE LLRDQPSFKA S
|
|---|
| |