| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0639 |
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| Symbol | |
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| ID | 6205240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 781060 |
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| End bp | 782850 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641690262 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001817529 |
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| Protein GI | 182412463 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACCC GTGTACTGCC ACTGCTCGCG TCGCTGCTCG TTGTGCTCGC CAGCCGGGGA
TGGGCGCAAA CGCCCCCCAC GGAGACGCCG GTGATTCCGT CGGAGCCCGC CGCTGCGGTT
ACCTCGCCGA CAGACTCCGC TTCCGGCGAC CCCAGCGTTG CGATCAAGGA CGCCGACGCG
ACGGGCAGCG CGACGAAGGG ACGCAGCGCG ACCGGCCAGG ACACGCTGTC CGTAGACTTT
CCCGACGAAG ACATCCGCAA CATTCTCCGC AATGTCGCCG ACCTGTTCGA GCTGAACCTC
GTCATTCCGG AGACGCTGCA AGGCAAGGCG TCGATCAAGC TCCGCGATGT GACGTGGCGG
CAGATCTTCC AGGTCATCCT CACCCCCGTC GGCTACACTT ATATCGAGGA GGGAAACATC
ATCACGATCG TTTCGAACGC CTCCATGCAG CAGGAACCGG TCACGACCGA GGTGTTCATC
GTGAACTACG CGCGGGCCGC TGACATCATG CCCACCATCA ATTCGCTGAT CGACACTGCC
GCCGGAGGCA AGATCGTGGT GGACGCGCGG AGCAATAGTC TCGTGATCAC CGAACGCCCG
TCGCGCATGA ACCGGATCCG TCCGATCATC GAGCAACTCG ACCGGGCAAC CGATCAGGTG
ATGATCGAGT CGAAATTCGT CGAAGTCACC GATGGCGACA TCCGCAACAT CGGTGTGAAC
TGGTCGTCGC TGAAGAGCTA CAAGGTGGGC GTGGGGCCAG ACCCGGAGAA CGAAGGCGGC
GTGGTGGGCT CGTTCAATCG CACGGCCGGT GGTCAACGGG ACGCCGGCAT CCAGCGGGGC
AACGACAACA CGACGACCAC GAGCGGCGGC ACGACGGGTA CGCAGACAAA CAACTCGAAC
ACCACCAATT CCGTGACCTC GAGCAACGGC GTGGTCACCG CTACGTCGGG CACGACCATC
GGCAGCAGCC TCACCAACAC GACGAACAGC GGGAATTCGA CGACCGCCAA CGAGACTCTC
AACCTGCTGA ACTCGCTGAC CGGTACTACG ACGAACGAGC GGGCGTTGAA CGCCGTGTTC
ACGGCCGATC AGTTCGGCCT GGTGATCAGC GCGCTGAACG AACTCACCAC GGCGAAGGTT
GTTTCGAATC CGACGGTAGT CACGCTCAAC AACACCGAAG CGTTCATCAA CATCGGCAAG
GAATACCCGA TTCCGAACTA CACCTACAAC GAGCAGCGGG GCAGCTTCGA GGTGGCGGGC
TTCACCTACA AGCCCATCGG CATCATCCTC AAGGTTACGC CGCAGGTGAA CGCCCGCGGA
TTCATCAAGC TGATGATCGA GCCCGAGGTG AGCAGTTTCA ACGATGCGGA CTCGGTGAAC
TTCGGCGGCG CGACCGGGGC ACGCATCCCC GTGATCCAGA CGAAAAAAGC ACGGACGCAG
ATTTCACTGA AGGACGGATT CACCATGGGG ATCGGTGGGT TGATCGACTC ACAGGTCTCG
AACGGCTCGA CGAAGGTGCC GGTGCTCGGC TCGATCCCGG TACTCGGCCG GCTGTTCAGT
TCGAAAACGC AATCCACCGC GACGCGCAAT CTGCTGATCT TCCTCACGGC CAAGACGCTT
TCGGCGGAAG GAGCCGCGCC CGGGGAAATA TTCGATCCCC GCCAGATCCG GCAGATGGAC
CTGAAGAAGG AGGACCTGCC CGGCTATCGC GATGGCACGG ATCCATTCGC TCCGCTGCCG
TCGACCGAAA AGCCGGCGGA AAAGAAGCAT AAATGGTTCG GGAAGAAATG A
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| Protein sequence | MKTRVLPLLA SLLVVLASRG WAQTPPTETP VIPSEPAAAV TSPTDSASGD PSVAIKDADA
TGSATKGRSA TGQDTLSVDF PDEDIRNILR NVADLFELNL VIPETLQGKA SIKLRDVTWR
QIFQVILTPV GYTYIEEGNI ITIVSNASMQ QEPVTTEVFI VNYARAADIM PTINSLIDTA
AGGKIVVDAR SNSLVITERP SRMNRIRPII EQLDRATDQV MIESKFVEVT DGDIRNIGVN
WSSLKSYKVG VGPDPENEGG VVGSFNRTAG GQRDAGIQRG NDNTTTTSGG TTGTQTNNSN
TTNSVTSSNG VVTATSGTTI GSSLTNTTNS GNSTTANETL NLLNSLTGTT TNERALNAVF
TADQFGLVIS ALNELTTAKV VSNPTVVTLN NTEAFINIGK EYPIPNYTYN EQRGSFEVAG
FTYKPIGIIL KVTPQVNARG FIKLMIEPEV SSFNDADSVN FGGATGARIP VIQTKKARTQ
ISLKDGFTMG IGGLIDSQVS NGSTKVPVLG SIPVLGRLFS SKTQSTATRN LLIFLTAKTL
SAEGAAPGEI FDPRQIRQMD LKKEDLPGYR DGTDPFAPLP STEKPAEKKH KWFGKK
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