| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0474 |
|---|
| Symbol | |
|---|
| ID | 6204479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 558524 |
|---|
| End bp | 560053 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641690096 |
|---|
| Product | proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| Protein accession | YP_001817364 |
|---|
| Protein GI | 182412298 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
|---|
| TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.229692 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATC TGCCCTTCGA TCCTCTCCTC GTCTCGATCG CGTCCCCGCT CGCGCTGGCG
CTCGCCATCG CCGCCGGGCT GCCGAAACGC TGGTCGGTCC GACTGGCCTA CGTGGCGTTC
GGAATTCCCG CGCTGCTCGC GCTGCACGTA TGGTGGCACT TCAGCGCCGT TCCGCAGGAG
AACGGCTACG CGTTTTTGAC GAACTATCCG ACGGGGCTCA GCGCCTATGG CATCGGCCTC
AAGCTGGGGC TCAACGGCAT CTCGCTGCCG CTGTTTGTGC TCGCCGCGCT CGTCGGCCTC
GCGGCCGGCC TCTACGCGAT CCAATCACAG GCGGAGCGAC TGAAGATTTA CCTGATGCTC
CTGCTGATCA TGCAGGGCGG ACTGCTGGGC GTGTTCGCGA GCGTCGACGT CTTCTTCTTC
TATTTTTTCC ACGAACTCGC GCTGATTCCG ACGTTCATCA TGGTCGGCGT GTGGGGAGGC
CGCGATCGCA GCTACGCCGC GATGAAGCTG ACGATCTATC TCACCGTGGG CGCGATGCTG
TCGCTGCTGG GGCTGATCGC GCTCTACGTG AAGAGTGGGG CGAACTCCTT CGACCTGATC
ACGCTGCGCC AATACGTCGC CGGCCAGCCG CTGGGCGAGA CGCTGCAGCA GAATATCTTT
GCGGTGCTGA TGTTCGGGTT CGGCATCCTG GTTTCGCTCT GGCCGTTCCA CACCTGGGCG
CCGCTGGGCT ACGGCGCGGC TCCCAGCTCG GCCGCGATGC TGCACGCCGG CGTGCTCAAG
AAGTTCGGCT TGTACGGTCT CATTCAGGTT GCGCTACCGC TGCTGCCCGC CGGCCTTGCG
CACTGGTCGC ACCCGCTGGC GTGGCTCGCT GTGATCGGCA ATGTGCTCGT CGTCGGCCTC
ATCACGATGG CGCAACGCGA CCTGAAGCAG ATGATCGGTT ACAGCTCGGT CATGCACATG
GGTTATGCGT TCCTCGGCAT CGCGGCGGGC AGCACGCTCG GCGTCGGCGG CGTCGTGATG
ATCATGGTGG CACACGGCCT CTCGGTGGCG CTGTTGTTCC TGCTGGCGAC GTCGATTCAT
CATCGTACGC ACACGTTCGC CATGGACGAG ATGGGCGGAC TTGCGCAGAA AACGCCGGTG
CTCGCCGCGT TCTTCACCGC GGCGACATTC GCGAGCATCG GGCTGCCAGG CTTCGCAAAT
TTCTGGGGCG AGTTCACCAT CTTCATCGCG CTGTGGCGGT TTTCACCGTT GATCACGGCG
CTGGCGGTGA GCGGCATCAT CATTTCCGCG ATCTATGGGT TGCGCTCGGT GGCGAACGTT
TTCTTCGGCG CGCCGACCGC CGCGCTGGCG ACCGTCACGG CGCAGCATCC GCCGGCCGAT
CTCCGCTGGT CCGAGAAGGT GCCCGCGTTG ATCCTGCTCG CGGCGCTGCT TTTTGTCGGC
TTCTGGCCGA AGTCGATCTC CACGCCGATC AACGCCGCGT TGAGCGCATC CGCGCCCGCC
GCAGCCATTC AAACCGCCGT CGCCCGCTAA
|
|---|
| Protein sequence | MSNLPFDPLL VSIASPLALA LAIAAGLPKR WSVRLAYVAF GIPALLALHV WWHFSAVPQE
NGYAFLTNYP TGLSAYGIGL KLGLNGISLP LFVLAALVGL AAGLYAIQSQ AERLKIYLML
LLIMQGGLLG VFASVDVFFF YFFHELALIP TFIMVGVWGG RDRSYAAMKL TIYLTVGAML
SLLGLIALYV KSGANSFDLI TLRQYVAGQP LGETLQQNIF AVLMFGFGIL VSLWPFHTWA
PLGYGAAPSS AAMLHAGVLK KFGLYGLIQV ALPLLPAGLA HWSHPLAWLA VIGNVLVVGL
ITMAQRDLKQ MIGYSSVMHM GYAFLGIAAG STLGVGGVVM IMVAHGLSVA LLFLLATSIH
HRTHTFAMDE MGGLAQKTPV LAAFFTAATF ASIGLPGFAN FWGEFTIFIA LWRFSPLITA
LAVSGIIISA IYGLRSVANV FFGAPTAALA TVTAQHPPAD LRWSEKVPAL ILLAALLFVG
FWPKSISTPI NAALSASAPA AAIQTAVAR
|
|---|
| |