| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0231 |
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| Symbol | |
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| ID | 6208435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 256280 |
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| End bp | 260434 |
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| Gene Length | 4155 bp |
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| Protein Length | 1384 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641689852 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001817122 |
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| Protein GI | 182412056 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATTC AACCTTCTGA AGTCGCCGCG TCCTCGGCCC GCACGGACAC CCGCGAGGCC
CTTGGGATCG AGGAGAGCGC GTTCGACTGC GTCTCGATCA CCGTCGCTTC GCCGGAGACC
ATTCGCAAAT GGTCGAAGGG CGAGGTGAAG AACCCCGAGA CGATCAACTA CCGCACGTTC
AAACCCGAGC CGGGCGGCCT GTTCTGCCAA AAGATCTTCG GGCCAGTGCG CGACTACGAG
TGCGCCTGCG GAAAATACAA GCGGATCAAA TACAAGGACG TCGTCTGCGA TCGCTGCGGC
GTCGAAGTGA CGATCGCCCG CGTGCGCCGC GAGCGGATGG GCCACATCGA GCTCGCCGTG
CCGGTCGCGC ACATCTGGTT CTTGAAGAGC ATGCCGAGCC GGCTCGGCCT CCTGCTCGAC
ATGACCGCCC GCTCGCTCGA GCGCGTGATC TATTACGAGA ACTACATGGT GATCGATCCG
GGCAAGACCC CGCTCGAGCC GCACCAGCTG CTGACCGACA CCGAGTATCG CCAGGCCATC
GACGAATACG GCGAGGATTC CTTCGTCGCG AAGATGGGCG CCGAGGCCGT GCGCGATGCG
CTGGTGAAGA CCGATCTCGA GGCCACCGTT GCCGAGCTGC AGGAGCAGAT GCGCGCGACG
AAGTCGAAGC AGATCAAGAA AAAGCTCTCG AAGCGCCTCA AGGTCATCCA GGGCTTCATC
CACTCGAAGA GCCGTCCGGA ATGGATGGTC CTCGAAGTGC TGCCGGTCAT CCCGCCGGAT
CTGCGCCCGC TCGTGCCGCT GGAAGGCGGC CGATTCGCCA CCTCGGACCT GAACGACCTC
TATCGCCGCG TCATCAACCG CAACAACCGC CTGCGGAATC TGATGCAGTT GAAGACGCCC
GACGTCATCA TCCACAACGA AAAGCGGATG CTGCAGGAGG CCGTCGATGC GTTGTTCGAC
AACGGTCGCC ACGGCCGCCC CGTCACGGGC GCCGGCAATC GCCCGCTGAA GTCGCTTTCG
GACATGCTCA AGGGCAAGCA GGGCCGGTTC CGCCAGAACC TGCTCGGCAA GCGTGTCGAC
TACTCGGGTC GTTCCGTGAT CGTCATCGGT CCGGAACTGA AGCTGCACCA ATGCGGCCTC
CCGAAGAAGA TGGCGCTCGT GCTCTTCGAG CCGTTCATCA TCCGCCGGCT GAAGGAACTC
GGCTTCGTGC ACACCGTCCG CGGTGCGCGC AAGATGATCG AGAAGAAGTC TCCAGAAGTC
TGGGACATCC TCGAGGAAGT CACCAAGGGC CATCCGGTGC TGCTCAACCG CGCGCCCACG
CTCCACCGCC TGTCCATTCA GGCGTTCGAG CCGGTCCTCA TCGAAGGTGA GGCCATTCGT
GTCCACCCGC TCGTCTGTAC CGCCTACAAC GCGGACTTCG ACGGGGACCA GATGGCCGTG
CACGTGCCGC TCTCGCTCGA GGCGATCATG GAGTGCAAGC TCCTGATGAT GGCGACGTCG
AACATCTTCT CGCCGTCGTC CGGCAAGCCG ATCCTCACGC CGTCGCAGGA CATCGTGCTC
GGCGCCTACT ACCTGACCGT CGAGCCGCGC AAGAAGCCGG CCAAGGACGA GCGCGTGCCG
TTGCTCTCCG GCCTGCAGGA AGTGCTCTAT GCCGTCGCCG ACGGGGCGAT GAAAAAGCAC
GATTGGGTCG AGGTACCGAA TCCCGACCAC GGCCGGGAGA CGATCTTCGG GAACAAGGAG
AAGAAGGTGC TGCGCACGAC GGTGGGCCGC GTGATCTTCA ACCAGATCTG GCCGGCCGGG
CTCGGCTTCG TGAACTTCCC GGTGCCGAAG TCCAAGCTTG GTGACCTGAT CCTGAATACG
CACAAGCTGA CGGGCAACCA GGCCACGGTC GAGACCCTCG ACCGGCTGAA GGAACTCGGT
TTCACGACCG CCATGCAGGC GGGCATCTCG ATCGGTATCG ACGACATGAT CATTCCGGAG
GCGAAGAAGG ACATTGTCGC CGAAACCCGG AAGAAGATCG CCGAGGTCGA GGCCCAGTTC
AACAAGGGCA TCATCACCGA GGGCGAGCGC AAGAACAAGG TCATCGACCT TTGGACCGGT
ACCACGGACC GCATCGCCAA GGAGGTCTTC GCGAAGCTGG AAAGCAACGA GGGCCGCAAC
GAGGTGAACC CGGTCTACAT CATGATGGAT TCGGGCGCGC GCGGTAATAA ACAGCAGGTT
CGCCAGCTGT GCGGCACCCG CGGCCTCATG GCCAAGCCGT CCGGCGAGAT CATCGAGCGG
CCGATTCTGT CCTCGTTCCG CGAGGGCCTC ACGGTGCTCG AATACTTCAT CTCAACCCAC
GGCGCCCGCA AGGGCCTCGC CGATACCGCG CTCAAGACGG CGGACGCCGG CTATCTCACC
CGCAAGCTCT GCGACGTGGC GATGGACGTC ATCATCGCCG AGGATGATTG CGGTTCCCGC
GATGGGGTGT GGAAGAAGGC GATCTTCGAA GGCGACGACG AAATCGTCAG CCTCCGCGAG
CGCATCGTCG GCCGCTTCTC GAGCGACGAC GTCTTCAACC CGATCAATCC GTCCGAGATC
CTGGTCGGCT CCGGCGAACT CATTACCGAG GAGATCGCGA CCCGAGTCGA CGAGCTCGGC
ATCGAGCGCG TCAAGGTCAT GTCGCCGCTC ACCTCGACCG CGCAGCATGG GATCGACGGC
AAGAGCTACG GCATCAACCC GGCCACCGGC AAGGTGGCGA AGGTTGGAGA CTCGGTCGGC
ATCATCGCCG CCCAGTCGAT CGGCGAGCCC GGCACGCAGT TGACGATGCG GACGTTCCAC
ATCGGTGGCG TGGCCTCCGG CGGTTTCAAG ACGCCGGAAA TCAAGGTCCG CGCCTCCGGC
ACCGTACGCT ATCGCGGTCT CCGCTTGGTG GAGACGGCGG ACGGCGGCTC GATCGTGCTC
AACAAGACTG GCACGATCCA GATCGTCGAC GCCGAGGAGA AGGAGCTCGA AACCTACAAC
ATCGTGGTCG GTTCCTTCCT GCACGTCGGC GACGGCGAGC AGATCCAGAA GGGCGCGATT
CTCGCGCAGT GGGATCCCTA CAACATTCCC GTGCTTTCCG AAAAGGGCGG CACGCTGGCG
TTCAAGGACA TGATCCCGGG CGTCACGGTG AAACGCGAAC TCGATGAATC GTCGGGCCGC
ATCGCCACGG TCGTCATCGA GCACAAGGAA GACCTCAACC CGCAGATCGA AATTCGCGAC
CCGAAGGGTA AGCCGCTCGC GGCTTACTCG ATTCCAGTGG GCGCGCAGAT CGCGGTCAAC
GAGGGCGACA TCATCCAACC GGGTGCGTTG CTCGCGAAGA CCCCGCGCCA GGCCTCCAAG
ACCAAGGACA TCACCGGCGG TCTGCCGCGC GTCGCCGAGC TCTTCGAAGC TCGCCGGCCG
AAGGATGCTG CGGAGATGTC GCGCATCGAC GGCATCGTTT CGTTCGAGGG CACCGTGCGC
GGCAAGCGCA AGCTGGTGGT CAAGAATGAC GATACCGCCC AGGAAGAGGA GCACCTGATC
GCCACCGGCA AGCACATCAT CGTGCAGCCG GGCGACGTGG TCCACAAGGG CCAGCACCTC
ACCGAAGGCG CCGCCGATCC GCACGAAATC CTCGAGATCC TCGGGCCCAG CGCGCTCTAC
GACTTCCTGA TTTCGCAGGT GCAGGAGGTG TACCGGCTCC AAGGTGTCGC GATCAACGAC
AAGCACATCG AGATCATCAT CCGTCAGATG CTCCGCAAGG TTCGGATCAC CGATCCGGGC
GACACGGAGA ACTTCTGGGG TGAGCAGGTC GACCGCGCGC AGTTCCTCGC CGAGAACCGG
CGGATCGAGG AAGCGGGTGG CAAGCCGGCC GAGGCCGAGC CGATCCTCTT GGGCATCACC
AAGGCTTCGC TCGAGACCGA GAGCTTCATC TCGGCGGCGA GCTTCCAAGA GACGACGCGC
GTGCTGACCG ACGCTTCGAC TCTGGGCAAA GTCGACATGC TAAAAGGCTT CAAGGAAAAC
GTGATCATGG GGCACTTGAT TCCGGCGGGC ACGGGTCTGC CGAAATACAA GAACCTCAAG
ATCACGCTGC CGTTCGGCGC CGATCTCCCG GTCGAGCCCG AGCAGCCGGC TCCGGCTGCG
ACTGAGACGG CCTAG
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| Protein sequence | MSIQPSEVAA SSARTDTREA LGIEESAFDC VSITVASPET IRKWSKGEVK NPETINYRTF
KPEPGGLFCQ KIFGPVRDYE CACGKYKRIK YKDVVCDRCG VEVTIARVRR ERMGHIELAV
PVAHIWFLKS MPSRLGLLLD MTARSLERVI YYENYMVIDP GKTPLEPHQL LTDTEYRQAI
DEYGEDSFVA KMGAEAVRDA LVKTDLEATV AELQEQMRAT KSKQIKKKLS KRLKVIQGFI
HSKSRPEWMV LEVLPVIPPD LRPLVPLEGG RFATSDLNDL YRRVINRNNR LRNLMQLKTP
DVIIHNEKRM LQEAVDALFD NGRHGRPVTG AGNRPLKSLS DMLKGKQGRF RQNLLGKRVD
YSGRSVIVIG PELKLHQCGL PKKMALVLFE PFIIRRLKEL GFVHTVRGAR KMIEKKSPEV
WDILEEVTKG HPVLLNRAPT LHRLSIQAFE PVLIEGEAIR VHPLVCTAYN ADFDGDQMAV
HVPLSLEAIM ECKLLMMATS NIFSPSSGKP ILTPSQDIVL GAYYLTVEPR KKPAKDERVP
LLSGLQEVLY AVADGAMKKH DWVEVPNPDH GRETIFGNKE KKVLRTTVGR VIFNQIWPAG
LGFVNFPVPK SKLGDLILNT HKLTGNQATV ETLDRLKELG FTTAMQAGIS IGIDDMIIPE
AKKDIVAETR KKIAEVEAQF NKGIITEGER KNKVIDLWTG TTDRIAKEVF AKLESNEGRN
EVNPVYIMMD SGARGNKQQV RQLCGTRGLM AKPSGEIIER PILSSFREGL TVLEYFISTH
GARKGLADTA LKTADAGYLT RKLCDVAMDV IIAEDDCGSR DGVWKKAIFE GDDEIVSLRE
RIVGRFSSDD VFNPINPSEI LVGSGELITE EIATRVDELG IERVKVMSPL TSTAQHGIDG
KSYGINPATG KVAKVGDSVG IIAAQSIGEP GTQLTMRTFH IGGVASGGFK TPEIKVRASG
TVRYRGLRLV ETADGGSIVL NKTGTIQIVD AEEKELETYN IVVGSFLHVG DGEQIQKGAI
LAQWDPYNIP VLSEKGGTLA FKDMIPGVTV KRELDESSGR IATVVIEHKE DLNPQIEIRD
PKGKPLAAYS IPVGAQIAVN EGDIIQPGAL LAKTPRQASK TKDITGGLPR VAELFEARRP
KDAAEMSRID GIVSFEGTVR GKRKLVVKND DTAQEEEHLI ATGKHIIVQP GDVVHKGQHL
TEGAADPHEI LEILGPSALY DFLISQVQEV YRLQGVAIND KHIEIIIRQM LRKVRITDPG
DTENFWGEQV DRAQFLAENR RIEEAGGKPA EAEPILLGIT KASLETESFI SAASFQETTR
VLTDASTLGK VDMLKGFKEN VIMGHLIPAG TGLPKYKNLK ITLPFGADLP VEPEQPAPAA
TETA
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