Gene BamMC406_6458 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6458 
Symbol 
ID6182802 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp1076387 
End bp1078129 
Gene Length1743 bp 
Protein Length580 aa 
Translation table11 
GC content73% 
IMG OID641689577 
Productintegrase family protein 
Protein accessionYP_001816436 
Protein GI172065724 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.446342 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCGC GCCTCGCCCT GCCGCCTTCC TCCGATTCCG CGCCCGCGCC CGCGCTAGCG 
GGCTTTCCCG ATGCCGACGA ACTCGCCGCG CTGCGTGCGT GGTACGCGGG CATGACCGTG
CGCCAGGCCG TCGAGCGCTA CCTGCCCGGC CGGCTCGGCG AAGGGCGCTC GGCGCGCGGC
GTGATCGGCG CGATTCGGCG TCGCCTCGCG CGTGTCGCGC GGCAGGCCGG ACGGCCCGAT
CTCGCCGAGC AGCTCGGTCA TGCCGACCGC GAGCGCATGC AGATGGCGAA GGCCGTGACC
GATGCGATCG GCGTGCTGCG CCATGCGCGC GCGCCGGTGC CGCAGATCAG CGACGACGTC
GGCCTGTGGC TGCCGGCGCG TGCGGTCGCC GCGCTGCGCG CGCACGGGAT CGCGACGCTC
GCCGACCTGA CCGTGCGGAT TCCGCGGCGG CGTCAGTGGT GGCGCGCGAT CGCGGGGCTC
GGCGTGGCGA GCGCGCGGCA TATCGAGGCG TTCTTTTCCG CGCATCCCGA CCTGACCGAG
CGGGCGCGCG CGCTGATTGC GGCGACGCCG CGCGGCAGCA TCGTGCCGTG GGAGCACCTG
AAGCTGCCGC ACGAGGTCGA CGGATCGGCC GGCACGTTCC GCGCGCCGCG CGCCACCAGC
ACGCTCGATG CGGACAACGA CTACGCGGCC GTGCACGCGT GGCTGTCGCT GCACGAATCG
GCCGCGACGC GGCGCGCGTA CCGCAAGGAG GCCGAGCGGC TGATCCTGTG GGCGATCGTC
GAGCGCGGCC GTGCGCTGTC GTCGCTGACG ACCGAGGATG CGGTCGCGTA TCGCGCGTTC
ATCCGGCGCC CGACGCCGCA CGAGCGCTGG GTCGGCCCCG TGCGGCCGCG CGGCGCGCCG
GACTGGCGGC CGTTTTCGGG CGGACTGTCC GCGCGCTCGG CCGCGTACAC GCTGTCGGTC
CTCGGCGCGC TGTTCCGCTG GCTGATCGAG CAGCGCTACC TGCTCGCGAA CCCGTTCGCG
GGCGTCAAGG TGCGCGACAC GCGCGGCGCG AATGCGCTCG ACACGTCGCA TGCGTTCACC
GAAGGCGAGT GGCTGCTCGT GCGCACGATC GCGGACGGGC TCGAGTTTCG CAAGGACAAG
CCGTCCGGCG CGCCCGGATC GGGCTGGACG CCGGCCGCCG CGCAACGGCT GCGCTTCATC
CTCGATTTCG GCTATGCGAC CGGGCTGCGC GCGAGCGAGC TGGTCGGCGC GACGCTCGGC
GACATCGACA CGGACGCGCA CGGCGACGCG TGGCTGAAGG TGATCGGCAA AGGCAGCAAG
GCCGCGCGGG TCGCGCTGCC GCCGCTCGCG CGCACGGCGC TCGATCGCTA TCTGGTCGCG
CGCCGGCTGC CGGTCACGCC GGTGCGCTGG CGGCCCGATA CGCCGCTGAT CCCGAGCCTC
GCGGAAGACG GCGCGGCCGC GATCACGAGC GTGCGGCTGT GGAAGGTAAT GCAGCGGTTC
TTCGCGCAGA CGGCCGCGCT CGTCGATGCC GACAATCCGG CGCTCGCGCA GAAGCTGCGG
CAGGCGAGCC CTCACTGGAT GCGGCATACC CATGCGACGC ACGCGCTCGC GCGGGGCGCC
GAGTTGACGA CGGTGCGCGA CAACCTGCGG CATGCATCGA TCTCGACGAC GTCGATCTAT
CTGCACGGGG ATGACGTGAA GCGGGCGCGG CAGATGTCGA GTGCGTTTTC GGCGGACAAA
TAA
 
Protein sequence
MTPRLALPPS SDSAPAPALA GFPDADELAA LRAWYAGMTV RQAVERYLPG RLGEGRSARG 
VIGAIRRRLA RVARQAGRPD LAEQLGHADR ERMQMAKAVT DAIGVLRHAR APVPQISDDV
GLWLPARAVA ALRAHGIATL ADLTVRIPRR RQWWRAIAGL GVASARHIEA FFSAHPDLTE
RARALIAATP RGSIVPWEHL KLPHEVDGSA GTFRAPRATS TLDADNDYAA VHAWLSLHES
AATRRAYRKE AERLILWAIV ERGRALSSLT TEDAVAYRAF IRRPTPHERW VGPVRPRGAP
DWRPFSGGLS ARSAAYTLSV LGALFRWLIE QRYLLANPFA GVKVRDTRGA NALDTSHAFT
EGEWLLVRTI ADGLEFRKDK PSGAPGSGWT PAAAQRLRFI LDFGYATGLR ASELVGATLG
DIDTDAHGDA WLKVIGKGSK AARVALPPLA RTALDRYLVA RRLPVTPVRW RPDTPLIPSL
AEDGAAAITS VRLWKVMQRF FAQTAALVDA DNPALAQKLR QASPHWMRHT HATHALARGA
ELTTVRDNLR HASISTTSIY LHGDDVKRAR QMSSAFSADK