Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6458 |
Symbol | |
ID | 6182802 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | - |
Start bp | 1076387 |
End bp | 1078129 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641689577 |
Product | integrase family protein |
Protein accession | YP_001816436 |
Protein GI | 172065724 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.446342 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACCGC GCCTCGCCCT GCCGCCTTCC TCCGATTCCG CGCCCGCGCC CGCGCTAGCG GGCTTTCCCG ATGCCGACGA ACTCGCCGCG CTGCGTGCGT GGTACGCGGG CATGACCGTG CGCCAGGCCG TCGAGCGCTA CCTGCCCGGC CGGCTCGGCG AAGGGCGCTC GGCGCGCGGC GTGATCGGCG CGATTCGGCG TCGCCTCGCG CGTGTCGCGC GGCAGGCCGG ACGGCCCGAT CTCGCCGAGC AGCTCGGTCA TGCCGACCGC GAGCGCATGC AGATGGCGAA GGCCGTGACC GATGCGATCG GCGTGCTGCG CCATGCGCGC GCGCCGGTGC CGCAGATCAG CGACGACGTC GGCCTGTGGC TGCCGGCGCG TGCGGTCGCC GCGCTGCGCG CGCACGGGAT CGCGACGCTC GCCGACCTGA CCGTGCGGAT TCCGCGGCGG CGTCAGTGGT GGCGCGCGAT CGCGGGGCTC GGCGTGGCGA GCGCGCGGCA TATCGAGGCG TTCTTTTCCG CGCATCCCGA CCTGACCGAG CGGGCGCGCG CGCTGATTGC GGCGACGCCG CGCGGCAGCA TCGTGCCGTG GGAGCACCTG AAGCTGCCGC ACGAGGTCGA CGGATCGGCC GGCACGTTCC GCGCGCCGCG CGCCACCAGC ACGCTCGATG CGGACAACGA CTACGCGGCC GTGCACGCGT GGCTGTCGCT GCACGAATCG GCCGCGACGC GGCGCGCGTA CCGCAAGGAG GCCGAGCGGC TGATCCTGTG GGCGATCGTC GAGCGCGGCC GTGCGCTGTC GTCGCTGACG ACCGAGGATG CGGTCGCGTA TCGCGCGTTC ATCCGGCGCC CGACGCCGCA CGAGCGCTGG GTCGGCCCCG TGCGGCCGCG CGGCGCGCCG GACTGGCGGC CGTTTTCGGG CGGACTGTCC GCGCGCTCGG CCGCGTACAC GCTGTCGGTC CTCGGCGCGC TGTTCCGCTG GCTGATCGAG CAGCGCTACC TGCTCGCGAA CCCGTTCGCG GGCGTCAAGG TGCGCGACAC GCGCGGCGCG AATGCGCTCG ACACGTCGCA TGCGTTCACC GAAGGCGAGT GGCTGCTCGT GCGCACGATC GCGGACGGGC TCGAGTTTCG CAAGGACAAG CCGTCCGGCG CGCCCGGATC GGGCTGGACG CCGGCCGCCG CGCAACGGCT GCGCTTCATC CTCGATTTCG GCTATGCGAC CGGGCTGCGC GCGAGCGAGC TGGTCGGCGC GACGCTCGGC GACATCGACA CGGACGCGCA CGGCGACGCG TGGCTGAAGG TGATCGGCAA AGGCAGCAAG GCCGCGCGGG TCGCGCTGCC GCCGCTCGCG CGCACGGCGC TCGATCGCTA TCTGGTCGCG CGCCGGCTGC CGGTCACGCC GGTGCGCTGG CGGCCCGATA CGCCGCTGAT CCCGAGCCTC GCGGAAGACG GCGCGGCCGC GATCACGAGC GTGCGGCTGT GGAAGGTAAT GCAGCGGTTC TTCGCGCAGA CGGCCGCGCT CGTCGATGCC GACAATCCGG CGCTCGCGCA GAAGCTGCGG CAGGCGAGCC CTCACTGGAT GCGGCATACC CATGCGACGC ACGCGCTCGC GCGGGGCGCC GAGTTGACGA CGGTGCGCGA CAACCTGCGG CATGCATCGA TCTCGACGAC GTCGATCTAT CTGCACGGGG ATGACGTGAA GCGGGCGCGG CAGATGTCGA GTGCGTTTTC GGCGGACAAA TAA
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Protein sequence | MTPRLALPPS SDSAPAPALA GFPDADELAA LRAWYAGMTV RQAVERYLPG RLGEGRSARG VIGAIRRRLA RVARQAGRPD LAEQLGHADR ERMQMAKAVT DAIGVLRHAR APVPQISDDV GLWLPARAVA ALRAHGIATL ADLTVRIPRR RQWWRAIAGL GVASARHIEA FFSAHPDLTE RARALIAATP RGSIVPWEHL KLPHEVDGSA GTFRAPRATS TLDADNDYAA VHAWLSLHES AATRRAYRKE AERLILWAIV ERGRALSSLT TEDAVAYRAF IRRPTPHERW VGPVRPRGAP DWRPFSGGLS ARSAAYTLSV LGALFRWLIE QRYLLANPFA GVKVRDTRGA NALDTSHAFT EGEWLLVRTI ADGLEFRKDK PSGAPGSGWT PAAAQRLRFI LDFGYATGLR ASELVGATLG DIDTDAHGDA WLKVIGKGSK AARVALPPLA RTALDRYLVA RRLPVTPVRW RPDTPLIPSL AEDGAAAITS VRLWKVMQRF FAQTAALVDA DNPALAQKLR QASPHWMRHT HATHALARGA ELTTVRDNLR HASISTTSIY LHGDDVKRAR QMSSAFSADK
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