| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6433 |
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| Symbol | |
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| ID | 6182400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 1045371 |
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| End bp | 1047182 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641689555 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001816414 |
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| Protein GI | 172065702 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCATC TGCTTCCGCA TTACGAACGA GAACTTTCAC TACTGCGCCG ATCAGTTGCG
ATCTTTGCAA CACGCTATCC CAAAATTGCC GTCCGTCTCG GGATTTCCGG CGACCGCTCC
GAAGATCCCC ATGTCGAACG AATGCTTCAG TCGTTCGCTC TCCTCGCCGC GGATATAGGC
AATCGGCTCG ACGACAACTA TCCGGAATTC GCCGAAGCCC TCCTCGGCAT GCTGTATCCC
CAGTATCTTC GAACGGTTCC TGCGTGTGCA ATCGCCCAGT TCGATGTCTC AGACATGTTC
GAAAAGCTCA CTGAGCCATC GCTCATTGCC CGCGGCACAG AACTGGCGAG CAAAACGGAA
GACTGCCTGT TCCGAACCGT ATATGACGTA ACGTTAGCTC CCGTGCGAAT TTCGGCTGCG
CGCTACGCCC CGGCAACTGC AGTTCCCGCC GATGCCGTCC TGCCCGCCGG CACAACCGGT
CTGCTCTCCA TCACCTTTGC AGTTACCCGC CCCGACTTTC GCATCGAAGC CGTTCCCAGC
CCGTTGCGCA TCCATGTCAA CGGCCCTCGC GAAGTCGTCG GCGCGGCAAT GGATACGATG
ACGATGCGCA CGGCAGCCGC CTTCGTCGAA AACGCCGAAC GTCGCTGGTC AACGCTGACC
ATGCCACCGC TCGCCGCCGC CGGCTACGAT GAAGCCGAGA AACTGCTCGA CGAAGACGAC
GGGCCGCCGG CCCTGCGGCT ACTGACCGAA TATTTTGCGT TTCCGAAGAA ATTCGATTTC
GTTGACGTCG ACCTCGCCGC GCTCGCGCGT GCGACGGGTT CCAGCCAGCA GCTCACATTG
CATCTCGCCA TTTGTGGCGT TCATCCGGAT TCGTGGACGG CACAGCGATT AAAAAATCTG
TCGGCGGACA ACCTGAAGCT CTTTTGCACG CCGATCGTCA ACCTGTTCCG GCTTACATCG
CTACCACTCA AGCGGAATCC GATCACGAAC ACCTACCCCG TGCAATCCCA GAATACGGAC
GTTGCGGATG TCGAAGTTTG GTCTGTCGAG TCGGTCCGTG CTACGACAGG CAGCTCCAGA
GCGAACATCA TCCATCCGTT CGCGTCGCTC ATGCACGGCA GTTCCGGCAA ACCGGCCGGC
CCCTATTGGG TTCTCATGCA CCATAACGCG GCCTCGCCAT TGGGAAAGAA GGAAACCGCG
CTCAGCCTAG TCGACCTCGA CGGCCGACCG GCAACCGACA CCGGAATCGA ACAGATAACG
GCAGACGTCA CCTGCTCGAA TGGCAATTTC CCTCGCACGA TGCGGGCCGG CGCCGAAGAT
GGTGATCTGG TGAACGAGCA GGGAACGATG GTTTCACGCA TCGTGATGCT GGACGCACCG
ACGGAAGTCG CGCGATTGTC GAGCGCAGGC GACGCGGCTT GGCGGCTCCT CACGCAGTTT
GCCCCGCACT CGATCGAATT GACCCACACC GGGCTTGCGG AGCTGAAACG CCTGTTCCGC
CAGTTCACTG CTCCTTCCGC GGGACACGCG AAACTGCTCG ACGGACTGAT GAACCTGAGC
CATCGGGCCA AACAACTCTG GCTTCCAGGA AAACCCATGC CGAGTTTCGT GCGGGGTCTG
GAAGTGACGT TGACGGTCGA CGAACAAGCG TTTGCCGCCG TCAGTTTGAA CGCGTTCATC
AGCGTGATGG ACCACTTCTT CACGGTGCAC GCGCCAGCGA CGAGTTTTGT CCAACTTGTC
GTGATGTCGG CCAACACTGG CGCGGAAATT CGACGTTGCA CGCCGCAGCC AGGCACAATC
ATGCTCGCCT GA
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| Protein sequence | MDHLLPHYER ELSLLRRSVA IFATRYPKIA VRLGISGDRS EDPHVERMLQ SFALLAADIG
NRLDDNYPEF AEALLGMLYP QYLRTVPACA IAQFDVSDMF EKLTEPSLIA RGTELASKTE
DCLFRTVYDV TLAPVRISAA RYAPATAVPA DAVLPAGTTG LLSITFAVTR PDFRIEAVPS
PLRIHVNGPR EVVGAAMDTM TMRTAAAFVE NAERRWSTLT MPPLAAAGYD EAEKLLDEDD
GPPALRLLTE YFAFPKKFDF VDVDLAALAR ATGSSQQLTL HLAICGVHPD SWTAQRLKNL
SADNLKLFCT PIVNLFRLTS LPLKRNPITN TYPVQSQNTD VADVEVWSVE SVRATTGSSR
ANIIHPFASL MHGSSGKPAG PYWVLMHHNA ASPLGKKETA LSLVDLDGRP ATDTGIEQIT
ADVTCSNGNF PRTMRAGAED GDLVNEQGTM VSRIVMLDAP TEVARLSSAG DAAWRLLTQF
APHSIELTHT GLAELKRLFR QFTAPSAGHA KLLDGLMNLS HRAKQLWLPG KPMPSFVRGL
EVTLTVDEQA FAAVSLNAFI SVMDHFFTVH APATSFVQLV VMSANTGAEI RRCTPQPGTI
MLA
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