| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6429 |
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| Symbol | |
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| ID | 6182240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 1040006 |
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| End bp | 1042873 |
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| Gene Length | 2868 bp |
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| Protein Length | 955 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641689552 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001816411 |
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| Protein GI | 172065699 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.727988 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGCG CCTTCGCTAG CGCGCTCGAT CAGAACAATC GTGCGATCAG GTTTCACTGG
GGCCGTCATC AAGACGCGCT CGCGCATGTC CTCGTGCCAC AGAACATCGA TTTGACGGAG
GGGCTTTGCG CCGGCATCGA AGGGCACTTA ACCTGTCTGT CTTCACGTCC GGATCTTCCA
CTCGCTACTT TTTTGGGGCT ACCGCTTTCA GTTCAACTGA TAACGGATAG AGGCAAACCG
TATCCGATCA ACGGGATCAT CACCGACGTA CGCGCCGGCC AGTCGGACGG CTCTCTCACA
TGTGTCCAGC TAACGTTGCG AGATGCGCTC AGCATTCTTG AGCAGCGTGT CAACAGCAGA
ACCTTCCGTT CGATGAGTGT CCCGGACATC CTGGAAACGT TGCTGCAGGA ATGGCAGCAA
CGCAGTTCAG CGTTGGCGCA GGCGTTCGAT TTCGAGCTCA TCCTCGATCG CAAGCAATAT
CCGAAGCGCG AGCAGGCCCG CCAGGCGGAT GAGTCGGATG CGGCCTTTAT TCGTCGACTA
TGCCGGCGCG ACGGCATTTT CTGGTACGCC CGGACCGGCA GACATGATGG CGCGGCCACC
GATACGCCGG TCCATACAAT CGTGTTCTGT GACGACCCGA CGAAATTGCC GCAAGCGCTC
GCGGGCAGCG TTTCCTACCA TCGAGGTGCG CAGTCGAGGG AGCGTGATTC GGTCACGCTA
TGGTCCACTG CTCGTGTGCT GACGCCTGGA AGCGTCCGAC GCGCCAGTTG GGATTACAAG
ACCGGCAGGA TGCTTCAGTC CGAGCAAGAG ACGATCATCG ATCAGGGAGA GGCCGGAAAC
GATCTCGCGA AGTTGCTGGC CGATTCAGTC ATCGACGTCC CGCATGTGGG CGATTCCGAT
GCCGATCAGG AGCGCTTGGC GAAGGCACGC ATTCTTGCGC ACGAACATCG CGCCGAATGC
GTATATGCGT CCAGTGATGT CCGCGATGTG TCGCCAGGTT GCTGGTTCAC GCTGCAGGGG
CATCCAGAAG TCGACACACG GCCGGAGGAA CAGCGCCAAT TCGTCGTTAC CAGCCTTCAC
CATCGAGCCA CCAACAATTT TGCCAAGGAG CTGGACGAAC GGGCTCAGGC ATTGTTTGCC
GCGAGCCGCT GGAGCTTCGA TGCGTTGCCG GCTCAGGAAG GGGACGGCGT CCGCTACGAG
AACACGTTCA TATGCGTGCG CCGTGGCGTG CCGCTGACGC CAGCCTACGA TCCGCATGTC
GATCTGCCGC CCGTGCATCC ATTTACCGCC AAGGTGGTCG GCCGGGACGG TGAAGAAGTC
CATTGCGATG AACTCGGCCG CATCAAGGTG CAGATTCTTG GTTTGCGAGC CGATGACCAT
GCACATGCGC ACGGTGCCGG CGCTAGCGGA ACCGAGCGGG ACAGCGCGTG GGTAAGATGG
GTCAGTCCAT GGGCAGGCCC GAACTACGGG ATGGACATGT TGCCGCGCGC CGGCATGGAA
GTGCTGGTCG ACCATTTGCA CGGCGATCCG GACAAGATGA TCGTGACAGG GGTGCTGCAC
AGCGGTCCCA ACATGCCGGC CACGTTCAGC CACACGGGCT CGCTTCCGGG CAATCGATAT
CTGTCCGGCA TCAAGACCAA GGAAGTCAAG GCGGATCGAT ATAACCAGTT GCGCTTCGAC
GATACGCCCG GCCAGATCAG CAGCCAGCTT GCCAGCGAGC ACACCTATAC GCAGTTGAAC
CTCGGCTACC TCACGGAGCC TCGCGATGGT GGTCAGGGCG CACCTCGCGG TGACGGCCTG
GAGGCAAGAA CCGATGCGCA GGCCGTCGTT CGTGCCGGGA AAGGCGTGTA CGTGACGGCT
CAACAGCAGG GGCGTGCCGA AGGCAAGATG CTCGAGCGGA CGGCGTTGCA GACGTTGATC
GAGCAATTGC AGGAGCTGGT TCAAAACCTT GGCGACGCAT CTGCTGCTCA TGATGCAGAC
AATACCGACC TCGCGCGTAT CGAGAAGATC GCGTCGCAGA TCAAGAGTTG GGATGCAGGT
AGCAACGTCA ACCAGGGCGG TGGCACTGGT GGCGCACCAA TGGTTGCCAT CGAGGGGCCG
GCCGGCGTGA CCGTGGTCAG TCAGGACGCG ATGGTGCTCG GTGCGCAGAC GACCATCGAT
GCCGTGAGCT CCGGCAATAC GCAGATCAGT GCGGGACGGC GGTTGCTGAT ACGGGTCGGG
GACTGGATGA GCGCCTTCGC GGCCAAGGGG ATGAAACTGG TCACGGCGGA TGGCAAGCTT
CGGATTGAGG CGCACAAGGA AGACGTCATC GTCAAAGCTG CCAAGCGCAT CATTCTCGAG
GCCGGTGAGG AGATCGTGTT CCGTTCGCCG AAAGTCAGTA CGCAGGCGAG CGACGAAGCG
TCGATCAATG GCGGATCCAG CTACAGCCAG TGGAGCGGAA GCGGCGTGGT CCATGGAACG
AGCGGCGTTT GGCGCGAGCA CGCGGCGTCG CATAGCCTCG TGGGGCCCGA CAACAAGCCG
GTGAAGGTGC CCGATCCCGT TTCGTTCAAG GAACTGGAGC AAAAGGAAAG TCTTGCAGTG
GTCCTTCGTT CGCATCCAGA TGGCGGTCGG CCGCTTGCCT ATGAGCCGTA TACCCTTTAC
AAGGGCGCAG CCAAGATTGC GGACGGTGTA ACGGACGAGC ACGGTCAGTT GATTATTGCC
AATCACCAGA AGGGCACGTC TTCGTATATG GTCAAGCTTC ACAACGGCCA CGAAATCGAT
GTGCCGGTGA TGGAGGGGGC TTTGACCGAC GATGATCAAT TGGCTGCCGA GGGATGGCGG
GCCATTGATG ATGATCCTGA GTCGCGCCAG CGCCACGCAC AGGGCTGA
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| Protein sequence | MLRAFASALD QNNRAIRFHW GRHQDALAHV LVPQNIDLTE GLCAGIEGHL TCLSSRPDLP
LATFLGLPLS VQLITDRGKP YPINGIITDV RAGQSDGSLT CVQLTLRDAL SILEQRVNSR
TFRSMSVPDI LETLLQEWQQ RSSALAQAFD FELILDRKQY PKREQARQAD ESDAAFIRRL
CRRDGIFWYA RTGRHDGAAT DTPVHTIVFC DDPTKLPQAL AGSVSYHRGA QSRERDSVTL
WSTARVLTPG SVRRASWDYK TGRMLQSEQE TIIDQGEAGN DLAKLLADSV IDVPHVGDSD
ADQERLAKAR ILAHEHRAEC VYASSDVRDV SPGCWFTLQG HPEVDTRPEE QRQFVVTSLH
HRATNNFAKE LDERAQALFA ASRWSFDALP AQEGDGVRYE NTFICVRRGV PLTPAYDPHV
DLPPVHPFTA KVVGRDGEEV HCDELGRIKV QILGLRADDH AHAHGAGASG TERDSAWVRW
VSPWAGPNYG MDMLPRAGME VLVDHLHGDP DKMIVTGVLH SGPNMPATFS HTGSLPGNRY
LSGIKTKEVK ADRYNQLRFD DTPGQISSQL ASEHTYTQLN LGYLTEPRDG GQGAPRGDGL
EARTDAQAVV RAGKGVYVTA QQQGRAEGKM LERTALQTLI EQLQELVQNL GDASAAHDAD
NTDLARIEKI ASQIKSWDAG SNVNQGGGTG GAPMVAIEGP AGVTVVSQDA MVLGAQTTID
AVSSGNTQIS AGRRLLIRVG DWMSAFAAKG MKLVTADGKL RIEAHKEDVI VKAAKRIILE
AGEEIVFRSP KVSTQASDEA SINGGSSYSQ WSGSGVVHGT SGVWREHAAS HSLVGPDNKP
VKVPDPVSFK ELEQKESLAV VLRSHPDGGR PLAYEPYTLY KGAAKIADGV TDEHGQLIIA
NHQKGTSSYM VKLHNGHEID VPVMEGALTD DDQLAAEGWR AIDDDPESRQ RHAQG
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