| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6404 |
|---|
| Symbol | |
|---|
| ID | 6182549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 1010740 |
|---|
| End bp | 1011600 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641689528 |
|---|
| Product | transport-associated |
|---|
| Protein accession | YP_001816387 |
|---|
| Protein GI | 172065675 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2823] Predicted periplasmic or secreted lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0981375 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.190645 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGAC GATATCCGGG ACGGCAAGCC GAACGCAGCG GGCCGCCCGA CTGGCAGGAA
CGCGGCGAAC GTGCGTACCG GGGCGGCGAG CGCGACTTTC GCGGCGACGA AACCCGGCGG
CACGACGCCG ACTATGAATC CGCGTACCGG CGCTTCGCGA GCGAGAACGT CGGCCCGGAA
GACTGGGGCA GCGAATGGAG CGAACGCTCG GCGCGCACGT CGGCCGAGCG GCGTCCGGGC
GACGTCGGCG GCGACTGGCG CGACGCGCCG GGCGGGTCGC GCGATCCGGA GTGGGAAGCC
GAGCGCGGCT ACGGCAACCG CGGTCGTCGC ATGGAAGGCG GCGAGGGCCG CGAAGGTCGC
GAAGGCCGGT ATGGTGGCGA TCAGCCGGGG TTCCGCGAGC ATTACCGGAT GGGCGGGTAC
GGCGGCGAGC GCGACCATGA TCCGAGCGAT CCACGCGATC CGCGCCGTAC CGATGCGCAA
CGCGAGGCCA TGCGCCAGCG CCGTGGCCCG AAAGGCTATA CGCGCTCGGA CGAGCGCATT
CGCGAGGACG TGTGCGAGCG GCTTGCGCAC GCGCTCGACA TCGACGTGAG CGACGTGTCC
GTGCAAGTGC GCGACGGCCG CGTCGAACTG GACGGCACCG TGCCGTCGCG CTGGATGAAG
CACGACATCG AGGACATCGC CGACGGCTGC ATGTGCGTGC GCGACGTCGA GAACCGCGTG
CGGGTGCGCC GCGACGCCGA CGAACACCAA CCGGGCACGG TGCTGCATCC GTCCCAACGC
ACCGTCACGC CGACGCAGCC CGCCGCGCGC GACCCCGAAC CGGGCAGCGG CGCCGGCCGC
GACCGCGAAT CGCACCATTG A
|
|---|
| Protein sequence | MQRRYPGRQA ERSGPPDWQE RGERAYRGGE RDFRGDETRR HDADYESAYR RFASENVGPE
DWGSEWSERS ARTSAERRPG DVGGDWRDAP GGSRDPEWEA ERGYGNRGRR MEGGEGREGR
EGRYGGDQPG FREHYRMGGY GGERDHDPSD PRDPRRTDAQ REAMRQRRGP KGYTRSDERI
REDVCERLAH ALDIDVSDVS VQVRDGRVEL DGTVPSRWMK HDIEDIADGC MCVRDVENRV
RVRRDADEHQ PGTVLHPSQR TVTPTQPAAR DPEPGSGAGR DRESHH
|
|---|
| |