| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6369 |
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| Symbol | |
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| ID | 6182134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 972343 |
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| End bp | 974166 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641689493 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001816352 |
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| Protein GI | 172065640 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATGGC TCTCGGACGT CGAAACCCGC ATCACGCGCA GCGATTTGAT CGGGGCATCG
CGCCTGCTCG ATATCGATCG TGCAATCGAG TCGGGCAACC TGCGCGCCTT CATTGCGTGC
AGCCGGTTGA TGCTGCTGCG CGGCCGGCTT CATGACGCGC AAGATATGCT CGATCGGGCG
CTGCACATCG AACCGGACAG TGTCGACGCG CTGATCGAAC GCGGGCGCCT TTCCATTCGC
TTGGGCGACG ATGTCGACGC GTGCGAGTGG TTTCATCGCG TGGGGTTAAA GGAAAACCTC
GGTGATAGCT GGCTGATCGA CTGGTTCGAT GCGTCGCTGC GTTGCAGTCG CGTCGAAGAC
GCCACCCATA TCGCGCTCGT GCTGTGTCGG CATTTCGCCG CCGACGCTCA CAACTGGTTC
CGCCTCGGGC TCGCGAATCA CGCGGCGCGC CACTACGCGC AGGCACTCGC CGCCTATGAG
AAAGCGGCTG ACATGAATCC CCGCTTGCCG ATGCTGCGCA ACAATTGGGG CGCGGCTTAC
CTGGAATTGG GCCGGCATGA CGAGGCACGC AAGCTGCTCG AAACGACGAT CGAGGAAGAA
CCCAACCATG CGTTGGCATG GACGAACCTC GCCTCCGTGC TGCTGAAAAC CGGCAACATC
GCCGATAGCC TCGTGGCAGC GGAGCGTGCT TGCGCCCTTG CGCCGAACTA CGTCACGGCA
TTGCAGACGT ATTCCTACGT GCTGCGTGAA TGTGGCCGGT TCGACGCGGC GCTCGACATC
GCGCAGCGTG CGCTGAGCCT CGAACCGAAT AACCCGTCGG TCGTGTGGAC CGTCGCGATG
CTGCAATTGC TGCGCGGCGA CTATGAGAAC GGCTGGCGCA ATCACGAAGC ACGGTGGGCC
GGCTCGCCCG AACTGCGCGA CATTTCACCG AACATCCCGG CTCCGCTTTG GAACGGTGAA
CCGCTCGCCG GCAAAACGAT TTTTGTGTGG GGAGAACAGG GCCACGGCGA CGCATTGCAA
TTCATGCGTT TCGTCCCGGC ATTTGCCCAA TACGTCAGGC AGCAGCACGG AAAGCTCGTG
TACTGCTGTT TCGAACCGTT GCATGCGCTT TTTGCACGCA GTCTTGGCGA TGCGGTCGAA
ATGGTCATCG CGCACAATCA GCGCCCTCTG CCGCCGTTCG ACTTTCATTT GCCGGTCGGC
AGCCTGCCTT GCGTGCTCGA TGCGCGGCTG GCCGACCTGC CCGGCACGCC GTACCTGAAG
GCCGATCGCG CGAACGTGGC CAACTGGCGC TCTGCCCTGT CCGGCGAGCG GAAATTGCGT
GTCGGCATTG CGTGGAGCGG CAGCAAGACA CATCAGCGCA ATCCGCTTCG CTCGGTGGAT
CCGATGGATT ACGTCCATGC GCTCGCGGGC GTGAGCGACG TGACGTTCGT CAATTTGCAG
ATGGACGCGC ATGGCGATGT GCTGCGTCTG CAAAACGCGG GGCTGCCGCT GCTCGATCCG
ACATCCGGTC TGTCGTCGTT CGACGATACG GCGGCGCTCG TCGCGAGCCT CGATCTGGTC
ATCACCGTCT GCACGTCGAT CGCACATCTG GCAGGCGGGC TCGGCGTTCC AACCTGGGTA
CTGCTCGACG TGAATCCGCA CTGGATCTGG ATGACCGAGC GGGCCGACAG TCCGTGGTAT
CCGAACACCC GCCTTTATCG GCAGCCCGCA TACGGGGAAT GGGCGCCGGT GTTCGAAGCG
TTGGCGCGCG ATCTGGCCGT GCTCGCGTCG AAGCGGGACA CGCACGAACC CATCACAACG
AACCCAACGG GGAGCCTCCA TTGA
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| Protein sequence | MKWLSDVETR ITRSDLIGAS RLLDIDRAIE SGNLRAFIAC SRLMLLRGRL HDAQDMLDRA
LHIEPDSVDA LIERGRLSIR LGDDVDACEW FHRVGLKENL GDSWLIDWFD ASLRCSRVED
ATHIALVLCR HFAADAHNWF RLGLANHAAR HYAQALAAYE KAADMNPRLP MLRNNWGAAY
LELGRHDEAR KLLETTIEEE PNHALAWTNL ASVLLKTGNI ADSLVAAERA CALAPNYVTA
LQTYSYVLRE CGRFDAALDI AQRALSLEPN NPSVVWTVAM LQLLRGDYEN GWRNHEARWA
GSPELRDISP NIPAPLWNGE PLAGKTIFVW GEQGHGDALQ FMRFVPAFAQ YVRQQHGKLV
YCCFEPLHAL FARSLGDAVE MVIAHNQRPL PPFDFHLPVG SLPCVLDARL ADLPGTPYLK
ADRANVANWR SALSGERKLR VGIAWSGSKT HQRNPLRSVD PMDYVHALAG VSDVTFVNLQ
MDAHGDVLRL QNAGLPLLDP TSGLSSFDDT AALVASLDLV ITVCTSIAHL AGGLGVPTWV
LLDVNPHWIW MTERADSPWY PNTRLYRQPA YGEWAPVFEA LARDLAVLAS KRDTHEPITT
NPTGSLH
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