| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6341 |
|---|
| Symbol | |
|---|
| ID | 6182600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 945756 |
|---|
| End bp | 946763 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641689467 |
|---|
| Product | Ku protein |
|---|
| Protein accession | YP_001816326 |
|---|
| Protein GI | 172065614 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1273] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02772] Ku protein, prokaryotic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.198926 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCGC GGATGATATG GAAAGGCGCG ATCAGTTTCG GGCTCGTTCA CGTGCCCGTG
CAGCTGTTCC CGGCGACACG CACCGTGAAG CCGTCGTTCC GGCTGCTCGA CAAGCGCTCG
ATGGATCCGG TCGGCTATCG GCAGATCAAC AAACGCACCG GCAAGGAGGT CACGCGCGAG
GACATCGTGC GCGGCTACGA GTACGAGAAG GAGCGCTACG TTGTACTGAC CGACGAAGAG
ATTCGCGCGG CGAATCCTGA ATCGACGCAG ACGGTCGACA TTCTGACCTT CGTCGACGCG
GACGCGGTGT CGTTCCTGTA TCTCGACACG CCGTACTACC TCGTGCCGGA CCGCAAGGGC
GAGAAGGTCT ATGCGCTGCT GCGCGACGCG CTGAAGGACA GCGGCAAGAT CGGCATCGCG
CTCGTCGTGA TGCGTGATCG CCAGCATCTC GGCGCGCTGA TTCCGGTCGG GCCGCTGCTC
GCGCTCGACA CGTTGCGCTG GCAGGAGGAG CTGCGCCCGC TCGACGAACT GTCGGTGCCG
ACGGAAGACG CGAAGCGCGC GGGCGTGACC GCGCGCGAGC TGACGATGGC GAAGAAGCTG
ATCGACGACA TGGCGGGCAA GTGGACGCCC GACGAGTATC ACGACACGTT CCGCGACGAC
ATCCTCGAAC TGGTCGAGCG CAAGGTGCGC TCGGGCAAGA TCGAGGAAAT CGAGGACCGG
CCGGCGCAGA CGGGCCGCGC CGCGACCAAC GTGGTCGACC TCACCGAACT GCTCAAGCGC
AGCCTGAAGG GCGGCGGCGG CGCGCGCGCG TCGGACCTGC GCGACGAACG CGCGGAAGAG
GAGGCCGAGA CGTCGCCGCC GGCCGGCGCA CGTCGCAAGC CGGCCGCGAA ATCCGCGTCG
AAAGGCGCGG CCACAAAGAC CGCGGCGAAG CGGCCGGCCA CGAAACGCGC GGCGACGGGC
GAGCATGCGG CGAAGAAAAC CGCCGTGCGC CGCAAGCACG CCGCATGA
|
|---|
| Protein sequence | MAPRMIWKGA ISFGLVHVPV QLFPATRTVK PSFRLLDKRS MDPVGYRQIN KRTGKEVTRE
DIVRGYEYEK ERYVVLTDEE IRAANPESTQ TVDILTFVDA DAVSFLYLDT PYYLVPDRKG
EKVYALLRDA LKDSGKIGIA LVVMRDRQHL GALIPVGPLL ALDTLRWQEE LRPLDELSVP
TEDAKRAGVT ARELTMAKKL IDDMAGKWTP DEYHDTFRDD ILELVERKVR SGKIEEIEDR
PAQTGRAATN VVDLTELLKR SLKGGGGARA SDLRDERAEE EAETSPPAGA RRKPAAKSAS
KGAATKTAAK RPATKRAATG EHAAKKTAVR RKHAA
|
|---|
| |