Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6321 |
Symbol | |
ID | 6182625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | + |
Start bp | 919223 |
End bp | 922636 |
Gene Length | 3414 bp |
Protein Length | 1137 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641689447 |
Product | trehalose synthase |
Protein accession | YP_001816306 |
Protein GI | 172065594 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases [COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
TIGRFAM ID | [TIGR02456] trehalose synthase [TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0765728 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0985799 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAAC GCGAAGATCC CCTCGACGAC GTGCGTCGCG CGCAATTCCC GTCCCTCGCA CCGGCCGGCA CGCCGCGCCG GCGCCGTTCA CGGCGCCGCG CGCCCGCGCT CTGCGCGGAC GATCCGCTGT GGTACAAGGA CGCGATCATC TACCAGGTAC ACGTGAAGTC GTTCTACGAC TCGAACAACG ACGGGATCGG CGACTTCCCT GGCCTGATCA TGAAGCTCGA CTACATCGCC GAGCTCGGCG TCGACACGAT CTGGCTGCTG CCGTTCTACC CGTCGCCGCG CCGCGACGAC GGCTACGACA TCGCCGACTA CCGCGACGTG CATCCCGACT ACGGCACGCT CGCCGACGTG CGGCGCTTCA TTCGCGAAGC GCACGCGCGC GGCATCCGCG TGATCACCGA GCTGGTGATC AACCACACGT CCGACCAGCA TCCGTGGTTC CAGCGCGCGC GGCGCGCGAA GCCCGGCTCG ATGCATCGCG ACTACTACGT GTGGTCGGAT ACCGACACGA AATACGCGGG CACGCGGATC ATCTTTCTGG ATACCGAAAC ATCGAACTGG ACGCACGACC CGGTGGCCAG CCAGTACTAC TGGCACCGCT TCTACTCGCA CCAGCCGGAC CTGAACTTCG ACAACCCGGC TGTCGTGCGC GAGGTGATCC AGGTGATGCG CTTCTGGCTC GATCTCGGTA TCGACGGGCT GCGGCTCGAC GCGGTGCCGT ACCTGGTCGA GCGCGAAGGC ACCAACAACG AGAACCTGCC GGAAACGCAT GCCATCCTGA AGCGGATCCG CGCGACGATC GACGCCGAGT ATCCGAACCG GATGCTGCTC GCGGAAGCGA ACCAGTGGCC GGAGGACGTG CAGGAATATT TCGGCGAGGA GAACGAATGC CACATGGCGT TCCACTTCCC GCTGATGCCG CGCATCTACA TGTCGATCGC GAGCGAGGAC CGCTTCCCGA TCATCGACAT CATGCGGCAG ACGCCGGCGC TCGCGCCGAG CAACCAGTGG GCCGTGTTCC TGCGCAATCA CGACGAGCTG ACGCTCGAGA TGGTGACCGA CTCGGAGCGC GACCTCCTGT GGCAGACCTA TGCGAGCGAC CGCCGCGCGC GGATCAACCT CGGGATCCGG CGCCGCCTCG CGCCGCTGAT GGAGCGCGAC CGGCGCCGCA TCGAGCTGAT CAACTCGCTG CTGCTGTCGA TGCCCGGCAC GCCGGTGATC TACTACGGCG ACGAGCTGGG CATGGGCGAC AACATCCACC TCGGCGACCG CGACGGGGTG CGCACGCCGA TGCAATGGTC GTCCGACCGC AACGGCGGCT TCTCGCGCGC GGACCCGGAA CTGCTGGTGC TGCCGCCCGT GATGGGCGCG CTGTACGGCT ATGACGCGGT CAACGTGGAG GCGCAGACAC GCGACCCGCA TTCGCTGCTG AACTGGACCC GCCGGATCCT GTCCACGCGC CGCGCGACGC AGTCGTTCGG CCGCGGCACG ATCCGCTTCC TGCGTCCGGA AAACCGCAAG GTGCTCGCGT ACCTGCGCGA GCTCGAAGGC CACGAGACGG TGCTGTGCGT GGCGAACCTG TCGCGCGCGT CGCAGGCGGT CGAGCTCGAC CTGTCCGAAT TCGCGGGCCG CGTGCCGATC GAGATGACGT CGGACTCGGC GTTTCCGCCG ATCGGGCAGC TCACGTACCT GCTGACCTTT CCGCCGTACG GGTTCCTGTG GTTCGTGCTG TCCGAGCACG GCCGCGAGCC GTCGTGGCGA CAGCCGCACG CGGAGCCGCT GCCCGAATAC GTGACGATCG TGATGCGGCG CGGCGACGCG CGGCCGGACG TCGGGCAACT GCACACGCTC GCGCACGATG CGCTCGCGTC GTGGCTCACG CGGCGGCGCT GGTTCGCATC GAAGGACCGC AAGATCGGCG ACGCGTGGCT GAACGTCGTC ACGCCGATGC CGGACGAACC GTTCCAGTAT GCGGAAGCCT GGGTGTCCGC GAGCGACGGC GGCGTCGAGC GCTATGTCGT GCCGCTCGCC ACCGCATGGG GCGGCGAGAC CTCGCATCCG CTGTTCACTC AACTCGCGCT CGCACGCGTG CGGCGCGGCC ATACGGTGGG CTACCTGACC GACGCATTCG CGCTGCCGGC GTTCGCACGC GGGATGCTGC GCAAGCTGCG CGATGGCGCG ACGGTGCCGA CGTCCGACGG CGGCCGCCTC GACTTCCTGC CCGAGCACGC GCTCGCCGGC CTCGATCCCG GCGACGAGGC CGAGGTGCGC TGGCTCGCGG CCGAACAGAG CAACAGCTCG CTCGTGATCG GCGACGCGAT CGTGCTGAAG CTGGTGCGCA AGGTCGCGCA CGGCATCCAT CCGGAAGCGG AGATGAGCCG GCACCTGACG CGGATCGGCT ATGCGAACAC CGCGACGCTC GCCGGTGAAG TCGTGCACGT CGATCCGGAC GGCACGCCGC ATACGGTCGC GATCCTGCAG CGCTACGTCG ACAACCAGGG CGACGCGTGG ACGCGTTCAT TCGATTTCCT GCGGCGCGCG ATCGACGAGC TCGCGCTACC GGCCGCGGGC GACGGCGACG CAACCGAAGT CGACGACGAA CCCGATGCGC TGCTCGGCTA CGCGGCGTTC GCGGGCATCA TCGGCACGCG GCTCGGCCAG TTGCACGTCG CGCTCGCGCA ACCGTCCGAC AACCCTGCGT TCGCCCCCGA AGCCGCGACG CCCGAGCACG TCGACGGCTG GTGCGTGGAT GCGATCGCGT CGTTCGAGCA CGCGCTCGAC GTGCTGCGCA CGCAGCTCGA CAAGCTCGAT CCGGTGAACC GCGCGGCCGC GGACACGCTG CTCGCGTCGC GCGACGCGGC CGTGCAGGCC ATCGGCGAAC TCGTGCCGCG CACGCTCGAC GCGCAATGCA CGCGCATTCA CGGCGATTTC CATCTCGGCC AGGTGCTCGA CGTGCAAGGC GACGCGCTGC TGATCGACTT CGAAGGCGAG CCGGCGCGCG CGCTCGACCG GCGCCGCGCG AAATCGCATC CGCTGCGCGA CGTGGCCGGC CTGCTGCGTT CGCTGTCGTA CGTGAGCGCC ACCGCGCAGT TCGCGATCGA GAAGGCGCCG CCGCAGACGG CCGGCCGCAA GCGCGCGCTG TTCGACCGCT TCGGCCAGGC CGCCGCCGAC CGCTTCGTCG AATGCTATCG CGCGGCCGCC GATCAGGCAC CCGAGCGCTT CGTCGACCCG CGTTACGCGG ACCGCCTGCT CGCGCTGTTC CTGATCGACA AGGCGTCGTA CGAGCTGTGC TACGAAGCCG CGAACCGCCC CGACTGGCTC GGTGTGCCGG TCGGCGGGCT CGCCGCGCTG ATCGAACGCC TGCTCGCGAC CGACCGCGCG CCCGACCATG GAGGCAACCG ATGA
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Protein sequence | MMKREDPLDD VRRAQFPSLA PAGTPRRRRS RRRAPALCAD DPLWYKDAII YQVHVKSFYD SNNDGIGDFP GLIMKLDYIA ELGVDTIWLL PFYPSPRRDD GYDIADYRDV HPDYGTLADV RRFIREAHAR GIRVITELVI NHTSDQHPWF QRARRAKPGS MHRDYYVWSD TDTKYAGTRI IFLDTETSNW THDPVASQYY WHRFYSHQPD LNFDNPAVVR EVIQVMRFWL DLGIDGLRLD AVPYLVEREG TNNENLPETH AILKRIRATI DAEYPNRMLL AEANQWPEDV QEYFGEENEC HMAFHFPLMP RIYMSIASED RFPIIDIMRQ TPALAPSNQW AVFLRNHDEL TLEMVTDSER DLLWQTYASD RRARINLGIR RRLAPLMERD RRRIELINSL LLSMPGTPVI YYGDELGMGD NIHLGDRDGV RTPMQWSSDR NGGFSRADPE LLVLPPVMGA LYGYDAVNVE AQTRDPHSLL NWTRRILSTR RATQSFGRGT IRFLRPENRK VLAYLRELEG HETVLCVANL SRASQAVELD LSEFAGRVPI EMTSDSAFPP IGQLTYLLTF PPYGFLWFVL SEHGREPSWR QPHAEPLPEY VTIVMRRGDA RPDVGQLHTL AHDALASWLT RRRWFASKDR KIGDAWLNVV TPMPDEPFQY AEAWVSASDG GVERYVVPLA TAWGGETSHP LFTQLALARV RRGHTVGYLT DAFALPAFAR GMLRKLRDGA TVPTSDGGRL DFLPEHALAG LDPGDEAEVR WLAAEQSNSS LVIGDAIVLK LVRKVAHGIH PEAEMSRHLT RIGYANTATL AGEVVHVDPD GTPHTVAILQ RYVDNQGDAW TRSFDFLRRA IDELALPAAG DGDATEVDDE PDALLGYAAF AGIIGTRLGQ LHVALAQPSD NPAFAPEAAT PEHVDGWCVD AIASFEHALD VLRTQLDKLD PVNRAAADTL LASRDAAVQA IGELVPRTLD AQCTRIHGDF HLGQVLDVQG DALLIDFEGE PARALDRRRA KSHPLRDVAG LLRSLSYVSA TAQFAIEKAP PQTAGRKRAL FDRFGQAAAD RFVECYRAAA DQAPERFVDP RYADRLLALF LIDKASYELC YEAANRPDWL GVPVGGLAAL IERLLATDRA PDHGGNR
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