Gene BamMC406_6321 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6321 
Symbol 
ID6182625 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp919223 
End bp922636 
Gene Length3414 bp 
Protein Length1137 aa 
Translation table11 
GC content69% 
IMG OID641689447 
Producttrehalose synthase 
Protein accessionYP_001816306 
Protein GI172065594 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases
[COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis 
TIGRFAM ID[TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0765728 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0985799 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAAC GCGAAGATCC CCTCGACGAC GTGCGTCGCG CGCAATTCCC GTCCCTCGCA 
CCGGCCGGCA CGCCGCGCCG GCGCCGTTCA CGGCGCCGCG CGCCCGCGCT CTGCGCGGAC
GATCCGCTGT GGTACAAGGA CGCGATCATC TACCAGGTAC ACGTGAAGTC GTTCTACGAC
TCGAACAACG ACGGGATCGG CGACTTCCCT GGCCTGATCA TGAAGCTCGA CTACATCGCC
GAGCTCGGCG TCGACACGAT CTGGCTGCTG CCGTTCTACC CGTCGCCGCG CCGCGACGAC
GGCTACGACA TCGCCGACTA CCGCGACGTG CATCCCGACT ACGGCACGCT CGCCGACGTG
CGGCGCTTCA TTCGCGAAGC GCACGCGCGC GGCATCCGCG TGATCACCGA GCTGGTGATC
AACCACACGT CCGACCAGCA TCCGTGGTTC CAGCGCGCGC GGCGCGCGAA GCCCGGCTCG
ATGCATCGCG ACTACTACGT GTGGTCGGAT ACCGACACGA AATACGCGGG CACGCGGATC
ATCTTTCTGG ATACCGAAAC ATCGAACTGG ACGCACGACC CGGTGGCCAG CCAGTACTAC
TGGCACCGCT TCTACTCGCA CCAGCCGGAC CTGAACTTCG ACAACCCGGC TGTCGTGCGC
GAGGTGATCC AGGTGATGCG CTTCTGGCTC GATCTCGGTA TCGACGGGCT GCGGCTCGAC
GCGGTGCCGT ACCTGGTCGA GCGCGAAGGC ACCAACAACG AGAACCTGCC GGAAACGCAT
GCCATCCTGA AGCGGATCCG CGCGACGATC GACGCCGAGT ATCCGAACCG GATGCTGCTC
GCGGAAGCGA ACCAGTGGCC GGAGGACGTG CAGGAATATT TCGGCGAGGA GAACGAATGC
CACATGGCGT TCCACTTCCC GCTGATGCCG CGCATCTACA TGTCGATCGC GAGCGAGGAC
CGCTTCCCGA TCATCGACAT CATGCGGCAG ACGCCGGCGC TCGCGCCGAG CAACCAGTGG
GCCGTGTTCC TGCGCAATCA CGACGAGCTG ACGCTCGAGA TGGTGACCGA CTCGGAGCGC
GACCTCCTGT GGCAGACCTA TGCGAGCGAC CGCCGCGCGC GGATCAACCT CGGGATCCGG
CGCCGCCTCG CGCCGCTGAT GGAGCGCGAC CGGCGCCGCA TCGAGCTGAT CAACTCGCTG
CTGCTGTCGA TGCCCGGCAC GCCGGTGATC TACTACGGCG ACGAGCTGGG CATGGGCGAC
AACATCCACC TCGGCGACCG CGACGGGGTG CGCACGCCGA TGCAATGGTC GTCCGACCGC
AACGGCGGCT TCTCGCGCGC GGACCCGGAA CTGCTGGTGC TGCCGCCCGT GATGGGCGCG
CTGTACGGCT ATGACGCGGT CAACGTGGAG GCGCAGACAC GCGACCCGCA TTCGCTGCTG
AACTGGACCC GCCGGATCCT GTCCACGCGC CGCGCGACGC AGTCGTTCGG CCGCGGCACG
ATCCGCTTCC TGCGTCCGGA AAACCGCAAG GTGCTCGCGT ACCTGCGCGA GCTCGAAGGC
CACGAGACGG TGCTGTGCGT GGCGAACCTG TCGCGCGCGT CGCAGGCGGT CGAGCTCGAC
CTGTCCGAAT TCGCGGGCCG CGTGCCGATC GAGATGACGT CGGACTCGGC GTTTCCGCCG
ATCGGGCAGC TCACGTACCT GCTGACCTTT CCGCCGTACG GGTTCCTGTG GTTCGTGCTG
TCCGAGCACG GCCGCGAGCC GTCGTGGCGA CAGCCGCACG CGGAGCCGCT GCCCGAATAC
GTGACGATCG TGATGCGGCG CGGCGACGCG CGGCCGGACG TCGGGCAACT GCACACGCTC
GCGCACGATG CGCTCGCGTC GTGGCTCACG CGGCGGCGCT GGTTCGCATC GAAGGACCGC
AAGATCGGCG ACGCGTGGCT GAACGTCGTC ACGCCGATGC CGGACGAACC GTTCCAGTAT
GCGGAAGCCT GGGTGTCCGC GAGCGACGGC GGCGTCGAGC GCTATGTCGT GCCGCTCGCC
ACCGCATGGG GCGGCGAGAC CTCGCATCCG CTGTTCACTC AACTCGCGCT CGCACGCGTG
CGGCGCGGCC ATACGGTGGG CTACCTGACC GACGCATTCG CGCTGCCGGC GTTCGCACGC
GGGATGCTGC GCAAGCTGCG CGATGGCGCG ACGGTGCCGA CGTCCGACGG CGGCCGCCTC
GACTTCCTGC CCGAGCACGC GCTCGCCGGC CTCGATCCCG GCGACGAGGC CGAGGTGCGC
TGGCTCGCGG CCGAACAGAG CAACAGCTCG CTCGTGATCG GCGACGCGAT CGTGCTGAAG
CTGGTGCGCA AGGTCGCGCA CGGCATCCAT CCGGAAGCGG AGATGAGCCG GCACCTGACG
CGGATCGGCT ATGCGAACAC CGCGACGCTC GCCGGTGAAG TCGTGCACGT CGATCCGGAC
GGCACGCCGC ATACGGTCGC GATCCTGCAG CGCTACGTCG ACAACCAGGG CGACGCGTGG
ACGCGTTCAT TCGATTTCCT GCGGCGCGCG ATCGACGAGC TCGCGCTACC GGCCGCGGGC
GACGGCGACG CAACCGAAGT CGACGACGAA CCCGATGCGC TGCTCGGCTA CGCGGCGTTC
GCGGGCATCA TCGGCACGCG GCTCGGCCAG TTGCACGTCG CGCTCGCGCA ACCGTCCGAC
AACCCTGCGT TCGCCCCCGA AGCCGCGACG CCCGAGCACG TCGACGGCTG GTGCGTGGAT
GCGATCGCGT CGTTCGAGCA CGCGCTCGAC GTGCTGCGCA CGCAGCTCGA CAAGCTCGAT
CCGGTGAACC GCGCGGCCGC GGACACGCTG CTCGCGTCGC GCGACGCGGC CGTGCAGGCC
ATCGGCGAAC TCGTGCCGCG CACGCTCGAC GCGCAATGCA CGCGCATTCA CGGCGATTTC
CATCTCGGCC AGGTGCTCGA CGTGCAAGGC GACGCGCTGC TGATCGACTT CGAAGGCGAG
CCGGCGCGCG CGCTCGACCG GCGCCGCGCG AAATCGCATC CGCTGCGCGA CGTGGCCGGC
CTGCTGCGTT CGCTGTCGTA CGTGAGCGCC ACCGCGCAGT TCGCGATCGA GAAGGCGCCG
CCGCAGACGG CCGGCCGCAA GCGCGCGCTG TTCGACCGCT TCGGCCAGGC CGCCGCCGAC
CGCTTCGTCG AATGCTATCG CGCGGCCGCC GATCAGGCAC CCGAGCGCTT CGTCGACCCG
CGTTACGCGG ACCGCCTGCT CGCGCTGTTC CTGATCGACA AGGCGTCGTA CGAGCTGTGC
TACGAAGCCG CGAACCGCCC CGACTGGCTC GGTGTGCCGG TCGGCGGGCT CGCCGCGCTG
ATCGAACGCC TGCTCGCGAC CGACCGCGCG CCCGACCATG GAGGCAACCG ATGA
 
Protein sequence
MMKREDPLDD VRRAQFPSLA PAGTPRRRRS RRRAPALCAD DPLWYKDAII YQVHVKSFYD 
SNNDGIGDFP GLIMKLDYIA ELGVDTIWLL PFYPSPRRDD GYDIADYRDV HPDYGTLADV
RRFIREAHAR GIRVITELVI NHTSDQHPWF QRARRAKPGS MHRDYYVWSD TDTKYAGTRI
IFLDTETSNW THDPVASQYY WHRFYSHQPD LNFDNPAVVR EVIQVMRFWL DLGIDGLRLD
AVPYLVEREG TNNENLPETH AILKRIRATI DAEYPNRMLL AEANQWPEDV QEYFGEENEC
HMAFHFPLMP RIYMSIASED RFPIIDIMRQ TPALAPSNQW AVFLRNHDEL TLEMVTDSER
DLLWQTYASD RRARINLGIR RRLAPLMERD RRRIELINSL LLSMPGTPVI YYGDELGMGD
NIHLGDRDGV RTPMQWSSDR NGGFSRADPE LLVLPPVMGA LYGYDAVNVE AQTRDPHSLL
NWTRRILSTR RATQSFGRGT IRFLRPENRK VLAYLRELEG HETVLCVANL SRASQAVELD
LSEFAGRVPI EMTSDSAFPP IGQLTYLLTF PPYGFLWFVL SEHGREPSWR QPHAEPLPEY
VTIVMRRGDA RPDVGQLHTL AHDALASWLT RRRWFASKDR KIGDAWLNVV TPMPDEPFQY
AEAWVSASDG GVERYVVPLA TAWGGETSHP LFTQLALARV RRGHTVGYLT DAFALPAFAR
GMLRKLRDGA TVPTSDGGRL DFLPEHALAG LDPGDEAEVR WLAAEQSNSS LVIGDAIVLK
LVRKVAHGIH PEAEMSRHLT RIGYANTATL AGEVVHVDPD GTPHTVAILQ RYVDNQGDAW
TRSFDFLRRA IDELALPAAG DGDATEVDDE PDALLGYAAF AGIIGTRLGQ LHVALAQPSD
NPAFAPEAAT PEHVDGWCVD AIASFEHALD VLRTQLDKLD PVNRAAADTL LASRDAAVQA
IGELVPRTLD AQCTRIHGDF HLGQVLDVQG DALLIDFEGE PARALDRRRA KSHPLRDVAG
LLRSLSYVSA TAQFAIEKAP PQTAGRKRAL FDRFGQAAAD RFVECYRAAA DQAPERFVDP
RYADRLLALF LIDKASYELC YEAANRPDWL GVPVGGLAAL IERLLATDRA PDHGGNR