| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6300 |
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| Symbol | |
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| ID | 6182741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 891834 |
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| End bp | 892787 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641689427 |
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| Product | catechol 1,2-dioxygenase |
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| Protein accession | YP_001816286 |
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| Protein GI | 172065574 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | [TIGR02439] catechol 1,2-dioxygenase, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00636694 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGTCA AAGTTTTCGA TACGAAGGAA GTGCAGGATC TGCTGAAGGC CGCGTCGAAC
GCGGGCACGA ACGGCGCGAA CGGCACGCAG GCCGGCAACG CGCGCACGCA GCAGATCGTC
CACCGGCTGC TCGGCGACCT GTTCAAGGCG ATCGACGATC TCGACATCAC GCCCGACGAA
GTGTGGGCCG GCGTGAACTA CCTGAACAAG CTCGGCCAGG ACGGCGAAGC GGCGCTGCTC
GCGGCGGGCC TCGGCCTCGA GAAGTATCTC GACATCCGGA TGGACGCCGA GGACGAGGCG
ATCGGCCTGG ACGGCGGCAC GCCGCGCACG ATCGAAGGCC CGCTGTATGT CGCCGGCGCG
CCGGTGCGCG ACGGCGTCGC GAAGATCGAT CTCGACGCGG ACGAAGGCGC GGGCCCGCTC
GTGATCCACG GCACGGTCAC GGGGCTCGAC GGCAAGCCGG TGGCCGGCGC GCTGGTCGAG
TGCTGGCACG CGAACTCGCA CGGCTTCTAT TCGCACTTCG ACCCGACCGG CAAGCAGAGC
GATTTCAACC TGCGCGGCGC GGTGAAGACG GGCGCGGACG GCAAGTACGA ATTCCGCACG
CTGATGCCGG TCGGCTACGG CTGCCCGCCG CAGGGCGCGA CGCAGCAGCT GCTGGATCGC
CTCGGCCGTC ACGGCAACCG TCCGGCGCAC GTGCACTTCT TCGTGACCAG CGACGGCCAC
CGCAAGCTGA CGACGCAGTT CAACATCGAA GGCGACCCGC TGATCTGGGA TGACTTCGCG
TATGCGACGC GCGAGGAGCT GATTCCGCCC GTCACTGCCA AGGCCGGCGG CGCCGCGCTC
GGGCTGAAGG CCGACGCGTA TCAGGACATC GAGTTCAACT TCGTCCTGAC GCCGCGCGTC
GAGGGCAAGG ACAACCAGAT CGTCGAACGC CTGCGCGCTT CCGCCACGGC ATAA
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| Protein sequence | MSVKVFDTKE VQDLLKAASN AGTNGANGTQ AGNARTQQIV HRLLGDLFKA IDDLDITPDE
VWAGVNYLNK LGQDGEAALL AAGLGLEKYL DIRMDAEDEA IGLDGGTPRT IEGPLYVAGA
PVRDGVAKID LDADEGAGPL VIHGTVTGLD GKPVAGALVE CWHANSHGFY SHFDPTGKQS
DFNLRGAVKT GADGKYEFRT LMPVGYGCPP QGATQQLLDR LGRHGNRPAH VHFFVTSDGH
RKLTTQFNIE GDPLIWDDFA YATREELIPP VTAKAGGAAL GLKADAYQDI EFNFVLTPRV
EGKDNQIVER LRASATA
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