| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6298 |
|---|
| Symbol | |
|---|
| ID | 6182739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 889876 |
|---|
| End bp | 890364 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641689425 |
|---|
| Product | benzoate 1,2-dioxygenase, small subunit |
|---|
| Protein accession | YP_001816284 |
|---|
| Protein GI | 172065572 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG5517] Small subunit of phenylpropionate dioxygenase |
|---|
| TIGRFAM ID | [TIGR03232] benzoate 1,2-dioxygenase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.00502382 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCG ATTACCGGAC CATTTGCGCG GCGCTGTATC GCGAAGCGCG CCTGCTCGAC
GATCGCGAGT GGGACGAGTG GCTGACCTGC TACACGGAGG ACGTCACGTA CTGGATGCCC
GCATGGGACG ACGACGACCG GCCGACCGAC GATCCGCAAA GCGAGATCTC GCTGATGTAC
TACGCGGATC GCGGCGGCCT CGAGGATCGC GTGTTCCGGA TCAAGACTGA GCGCAGCGGC
GCGTCGACGC CCGAGCCGCG CACCAGCCAC AACGTGACGA ACGTCGAGGT GCTGGCCGAG
CGCGACGGCG AGGTGGACGT GCGCTACAAC TTCGACACGC TCAACCATCG CTACCGCGTG
ACCGATCACT ACTTCGGCAC GATGTTCGTC ACGCTGCGCA AGGTGAACGA CGCGCTGCTG
ATCTCGAGCA AGAAGATCGT GCTGAAGAAC GACTATATCC GGCAGGTGCT CGACGTGTAT
CACGTCTGA
|
|---|
| Protein sequence | MNIDYRTICA ALYREARLLD DREWDEWLTC YTEDVTYWMP AWDDDDRPTD DPQSEISLMY
YADRGGLEDR VFRIKTERSG ASTPEPRTSH NVTNVEVLAE RDGEVDVRYN FDTLNHRYRV
TDHYFGTMFV TLRKVNDALL ISSKKIVLKN DYIRQVLDVY HV
|
|---|
| |