| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6296 |
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| Symbol | benD |
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| ID | 6182737 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 888039 |
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| End bp | 888809 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641689423 |
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| Product | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase |
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| Protein accession | YP_001816282 |
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| Protein GI | 172065570 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.362471 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00300205 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAACGAT TCTCCGGAAA GGTCGTCGTC GTCACCGGCG CGGCGCAGGG CATCGGCCGT
GGCGTCGCGC TGCGTGCGGC GGCCGAGGGC GGCCGCGTGC TGTTCGTCGA TCGTGCGGAA
TTCGTGGCCG AGGTGGCCGC CGAAGCGCCG GGCGGAAACA CGGCCGGCTT CGTCGCCGAT
CTCGAGACCT ACGACGGCGC GCACGCGGCG ATGGCGTGCG CGGTCGCGAC GTTCGGCCGG
ATCGACGTGC TGATCAACGG CGTCGGCGGC GCGATCCGGA TGCGGCCGTT CGCCGAGTTC
GAGCCCGCGC AGATCGACGC GGAAATCCGC CGCTCGCTGA TGCCGACGCT CTACAGCTGC
CACGCGGTGC TGCCGCATCT GCTGGCCGGG GGCGGCGGCA CGATCGTCAA CGTGTCATCG
AACGCGACGC GCGGAATTCG CCGCGTGCCG TACTCGGCCG CGAAGGGCGG CGTCAATGCG
TTGACCGCGG CGCTCGCGAT GGAATACGCG GAGCACAACA TCCGCGTGGT CGCGACCGCG
CCCGGCGGCA CCGCGGCGCC GCCGCGCCGC GTGCCGCGCA ATGCGGCCGG CGACAGCGAG
CAGGAACAGG CGTGGATGGC CGAAGCGGTG CGGCAGGTGA CCGACTCGAC GTTCTTCAAG
CGCTACGGCA GTCTCGAAGA ACAGATCGCG CCGATCCTGT TCCTCGCGTC CGACGAGGCG
AGCTACATCA CCGGCACGGT GCTGCCGGTC GCGGGCGGCG ATACGGGTTG A
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| Protein sequence | MQRFSGKVVV VTGAAQGIGR GVALRAAAEG GRVLFVDRAE FVAEVAAEAP GGNTAGFVAD
LETYDGAHAA MACAVATFGR IDVLINGVGG AIRMRPFAEF EPAQIDAEIR RSLMPTLYSC
HAVLPHLLAG GGGTIVNVSS NATRGIRRVP YSAAKGGVNA LTAALAMEYA EHNIRVVATA
PGGTAAPPRR VPRNAAGDSE QEQAWMAEAV RQVTDSTFFK RYGSLEEQIA PILFLASDEA
SYITGTVLPV AGGDTG
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