| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6290 |
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| Symbol | |
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| ID | 6182731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 880916 |
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| End bp | 882376 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641689417 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001816276 |
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| Protein GI | 172065564 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00975739 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTACCCA AACCCGTCGT TGCCGCGGTT CTTGTTGCCG TCCTGTTGGC GGGTTGCGCC
GTCGGTCCCG ACTATGCGCG CCCCGAGGTC GCGATGCCGC AGCGATTCCA GGGCCAGGCC
GCCGTGGACC AGCGGCACGC GGCCGCCGAT GCCGACCTCG CGACGTGGTG GACGGGGTTC
GGCGATCCGC GACTCACGCG CTACGTCACG CTGGCACTGG CGCAGAACCT CGATCTCGCG
CAGGCCGCCG CACGCGTCGC GCAGGCGCGC GCGGCGGTGG GGGCGGCGAA TGCCGCGCTG
CTGCCTTCGG GCGAGGTGAG TGGTCAGGCG GCGCGCGTCT ATCAGTCGGT CGAAACGCCG
TTGGGGCGGG TGCTGAATTC GGCGCCCGGT TTCGACCGTC ACGGCAGCGA CTATGAGGCC
GACTTCAACG CGAGCTGGGA GCTGGACGTG TTCGGCGGGT TGCGCCGCGG CCGCGAAGCG
GCGCTGGCCG ACTATCAGGC GTCGGAAGCC GGCGCGGTGG CGACGCGCCT TGCCGTCGCC
GCGCAAACCG CGGACATCTA CATCACGATT CGCGGATTGC AGGGCCGGCT GAAGGTCGCG
CGGCACCAGG TGCAGACCGA GGAGGATCTG TTGTCGACCA TCAGTCTGCT GTATGGCAAG
GGCCTCGCGG CGGAGCTTCA GGTCAGGCAG GCCGAAGGCG CGCTCGCGCA GGTGCGCGCG
ACGGTGCCGG TGCTCGAAGC GGCGCTCGAC ACGGCGATGA ATGCGCTCGA CGTGATGCTC
GGTTCGCAGC CCGGCACGCA TCGGGCGGAA TTGCTCGACG GCGGCGACGT GCCGGTTGCG
CCGCGCATCG CGGCGACCGG AACGCCCGGT GAGCTGCTCA GGCGGCGGCC CGACCTGATC
GTGGCCGAGC GGCGCGTGGC GGCGGCGAAC GCGCGCATCG GCGTGGCCAT CGCCGAGTAT
TACCCGAAGT TCTCGCTGAG CGGGCTGATC GGCAGCGCGA CGACGATGGG CGCGGGCAAC
CTGTTCACCG GCGGTGCCAA CCAGGCCGCG GGCGTGCTCG GCCTGCGCTG GCGCCTGTTC
GACTTCGGCC GGATCAATGC GCAGATCGCG CAGGCCAAAG GGCAGGATGC CGAAATGCTG
GCCGCGTATC GGCTCGCGGC GCTGCACGCG ACCGAGGACG TCGAAAACGC GTTCTCGGCG
CTCGTCAAGC GCGACGAGCA GGCAGCAGTT CTTGGCGGCG GCGTGGATTC GCTGGGCCGG
GCGAGAGCCG CGTCGTTTGC GGCGTACCAG AAAGGCGTCG TCAGCCTGAT CGAAGTGCTG
CAGGCCGATG AAAACCTGCT GCGGGCGTCC GACCAGCGCG TGCAGGCGCA AACCGAATCC
GCACGCGCGG CGGTCGCGGC GTTCAAGGCG CTCGGCGGTG GGTGGCAGGC GCCGGAATCG
GAAGCGGTGG CGGCGCGGTA A
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| Protein sequence | MLPKPVVAAV LVAVLLAGCA VGPDYARPEV AMPQRFQGQA AVDQRHAAAD ADLATWWTGF
GDPRLTRYVT LALAQNLDLA QAAARVAQAR AAVGAANAAL LPSGEVSGQA ARVYQSVETP
LGRVLNSAPG FDRHGSDYEA DFNASWELDV FGGLRRGREA ALADYQASEA GAVATRLAVA
AQTADIYITI RGLQGRLKVA RHQVQTEEDL LSTISLLYGK GLAAELQVRQ AEGALAQVRA
TVPVLEAALD TAMNALDVML GSQPGTHRAE LLDGGDVPVA PRIAATGTPG ELLRRRPDLI
VAERRVAAAN ARIGVAIAEY YPKFSLSGLI GSATTMGAGN LFTGGANQAA GVLGLRWRLF
DFGRINAQIA QAKGQDAEML AAYRLAALHA TEDVENAFSA LVKRDEQAAV LGGGVDSLGR
ARAASFAAYQ KGVVSLIEVL QADENLLRAS DQRVQAQTES ARAAVAAFKA LGGGWQAPES
EAVAAR
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