| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6283 |
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| Symbol | |
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| ID | 6182724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 869887 |
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| End bp | 871713 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641689410 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_001816269 |
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| Protein GI | 172065557 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.368758 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00160036 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCGACAG TGGCGGATTT CATCGTCGAA CGGCTGTACG ACTGGGGCGT GCGCCGCGTG
TACGGCTACC CGGGCGACGG CATCAACGGC TTTTTCGGCG CGCTCAGCCG CGCCGAGGGC
AAGATCGAAT TCATCCAGGC GCGCCACGAA GAGATGGCGG CCTTCATGGC GTCCGCGCAT
GCAAAATTTA CAGGCGAGCT TGGCGTGTGC GTCGCGACCT CGGGCCCCGG CGCCACGCAC
CTCGTGACCG GCCTCTACGA CGCGCGGCTC GACCACATGC CGGTGCTCGC GATCGTCGGC
CAGCAGGCGC GTGCCGCGCT CGGCGGCCAC TATCAGCAGG AAGTCGATCT GCCCGCGCTA
CTCAAGGACG TCGCGGGCGC TTTCGTCCAG CTTGCAGTGG TGCCCGCGCA GGTGCGCCAT
CTGGTCGACC GCGGGGTGCG CATCGCGCTC GGCGCGCGCA CCGTCACCGC GCTGGTGCTG
CCAAGCGACC TGCAGGAGCT CGACTATGCG CCGCCGAAGC GCGCGCACGG CACCGTGCAT
TCGGGGGTCG GCTACACGCC GCCGAAGGTG GTGCCGTACG CGGACGACCT GCAGCGCGCG
GCCGACGTGC TCAATGCGGG CAAGAAGGTC GCGATGCTGG TGGGCGCGGG CGCGCTGCAC
GCGACCGACG AGGTGATCGC GGTGGCCGAC CGGCTCGGCG CGGGCGCCGC GAAGGCGCTG
CTCGGCAAGG CCGCGCTGCC GGACGACCTG CCGTGGGTGA CGGGCTCGAT CGGGCTGCTC
GGCACCAAGC CGAGCTACGA GCTGATGACC GAATGCGACA CGCTGCTCGT CGTCGGCTCC
GGCTTCCCGT ATTCGGAATT CCTGCCGAAG GAAGGCCAGG CGCGCGGCGT GCAGATCGAC
CTGAAGGCCG ACATGCTGAG CCTGCGCTAT CCGATGGAGG TGAATCTCGT CGGCGACAGC
GCCGAGACGC TGTGCGCGCT GCTGCCGCTG CTGAAGGAGC GCGGCGACAC CGGCTGGCGC
GACCGGATCG CGAAATGGAA TGCGGACTGG CACGAAACGC TGGCCGCGCG CGCGGCCGCG
AAGGCGAGCG CGGGGCGCGG CGTGAATCCG CAGCGCGCGT TCACCGAGTT GTCGCCGCGG
CTGCCCGACG ACGTGATCCT GACGAGCGAT TCCGGCTCGT GCGCGAACTG GTACGCGCGC
GACCTGATGA TGCGGCGCGG GATGATGGGC TCGCTGTCGG GCGGACTCGC GTCGATGGGC
GCGGCGGTGC CCTACGCGAT CGCCGCGAAG TTCGCGTACC CGGTGCGCCC GGTGATCGCG
ATGGTCGGCG ACGGCGCGAT GCAGATGAAC AACATGGCCG AGCTGATCAC CGTCGCGAAG
TACTGGCGGC AATGGCCCGA TCCGCGCTGG ATCTGCATGG TGCTGAACAA CGAGGATCTG
AACCAGGTCA CATGGGAGCA GCGCGTGATG GAAGGCGACC CGAAGTTCGA CGCGTCGCAG
CAGATTCCGA ACGTGCCGTA CTCGCGCTTC GCGACGCTGC TCGGGCTGAA GGGCATCTAC
GTCGACGATC CGGAACAGCT CGGCGCCGCG TGGGACGAGG CGCTGGCTTC CGATCGTCCG
GTCGTGCTCG AGGTGAAAAG CGATCCGGAG GTGCCGCCGC TGCCGCCGCA CGTGACGCTG
CAGCAGGCAA AGCACTTCGC CGAGACGCTG GTGAAGGGCG ACCCGCGCGA AGCGAACGTC
ATCGTCGAGA CCGCGCGGCA GGTGCTGTCG GCCGTGCTGC CGGGCAATGG CGAACACGGT
GGCAAGGGAG GCAAGAAGGA GTCGTAG
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| Protein sequence | MATVADFIVE RLYDWGVRRV YGYPGDGING FFGALSRAEG KIEFIQARHE EMAAFMASAH
AKFTGELGVC VATSGPGATH LVTGLYDARL DHMPVLAIVG QQARAALGGH YQQEVDLPAL
LKDVAGAFVQ LAVVPAQVRH LVDRGVRIAL GARTVTALVL PSDLQELDYA PPKRAHGTVH
SGVGYTPPKV VPYADDLQRA ADVLNAGKKV AMLVGAGALH ATDEVIAVAD RLGAGAAKAL
LGKAALPDDL PWVTGSIGLL GTKPSYELMT ECDTLLVVGS GFPYSEFLPK EGQARGVQID
LKADMLSLRY PMEVNLVGDS AETLCALLPL LKERGDTGWR DRIAKWNADW HETLAARAAA
KASAGRGVNP QRAFTELSPR LPDDVILTSD SGSCANWYAR DLMMRRGMMG SLSGGLASMG
AAVPYAIAAK FAYPVRPVIA MVGDGAMQMN NMAELITVAK YWRQWPDPRW ICMVLNNEDL
NQVTWEQRVM EGDPKFDASQ QIPNVPYSRF ATLLGLKGIY VDDPEQLGAA WDEALASDRP
VVLEVKSDPE VPPLPPHVTL QQAKHFAETL VKGDPREANV IVETARQVLS AVLPGNGEHG
GKGGKKES
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