Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6279 |
Symbol | |
ID | 6182720 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | - |
Start bp | 865425 |
End bp | 867095 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641689406 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_001816265 |
Protein GI | 172065553 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.00998076 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCGCTG ACGACGCGTT GTCCGCCGCC AGGCCGCGTG GCCGGGATGG CCGCGCGCCC GATCCGCTGC GCGTCGGCGG CTGGTCGCCG ATGCGGATGT TTCGCGACGA CGATCCGGTC GACTTCGTGA TCGTCGGCAC CGGCGCCGGT GGCGGCACGC TCGCGTGCCG GCTCGCGGAG CACGGCTTCT CGGTCGTCGC GCTCGACGCG GGCGCATGGT GGCGGCCGCT CGAGGAATTC GCGTCCGACG AGTCGCACCA GCACAAGTTG TTCTGGACCG ACGAGCGGCT CTGCGACGGT GCCGATCCGC TGACGCTCGG CACCAACAAC AGCGGCCGCG CGGTCGGCGG CAGCACCGTG CATTTCGCGA TGGTGTCGCT GCGCTTTCGG CCCGAGTGGT TCCGCTCGCG CACGGCCCTG GGCTACGGCG TCGACTGGCC GCTCGACTGG CGCGAGATGT GGCGCTACTA CCGCGAGGTC GAGCAGGCGC TGAAGATCAG CGGGCCGGTG AGCTACCCGT GGGGGCCGCC GCGCCCGCGC TATCCGTACC GAGCACATGA GCTGAACGCG GCCGCGCTCG TGCTCGCGCG CGGCGCCGAG GCGCTCGGCA TCGACTGGAC GCCGACCCCG CTCGCGACGC TGTCCGCGCC GCGCGGTCGT GCGCATCCGT GTGTGTATCG CGGCTTCTGC ATCAGCGGCT GCGCGACCAA TGCGAAGCAG AGCGCACTCG TCACGTGGAT TCCGCGCGCG GTCGCGGCCG GCGCCGAGGT GCGCGATCTC GCGATGGCGC TGCGGATCGA GGCCGCGGGC GATCGCGTGA CGGGCGTGCA TTACCGGCGC GACGGCCGCA CGCGTTTCCA GCGTGCGCGC AATGTCGTCG TCGCCGGCTA CGCGATCGAG ACGCCGCGCT TGCTGCTGCT GTCCGCGAAC GGACGCCATC CGCAGGGGCT CGCGAACAGC TCGGGCCTCG TCGGCCGCTA CCTGATGGCG CAACTGAACC AGGCGTCGTG GGGGACGATG GACGACGAGG TGCGCTGGTA CAAAGGGCCG CCGTCGCTGT CGCTCACCGA GCACTGGAAC TACGTGGACG AAGGCAAGGA CTTCTTCGGA GGCTACTGCT GGATGAGCCA GGGGCCGTTG CCGATCGAAT GGGCGCGGAA GATCGCCGCG CGCGGGCTGT GGGGCGACGC GCTGAAGCGC GAGATGGCGC GCTACAACTT CCAGGCCGGC CTGAAGATCG TCGGCGAGAC GCTGCCGCGC GCGGAAAACC GCGTGACGCT CGCCGACGAG CGCGACGCGT TCGGGCTGCC GATCGCGCGC GTCACCTATT CATACGACGA CAACGACCGC CGGATGATGC GCCATGCGTT CGCGCAGATG GCGCGCTCGC TCGAAGCCGC CGGCGCGCGC GACATCTGGC ACGAAGAAGA CGACACCTGC CATCTCGCGG GCACCGTGCG GATGGGCGAC GACCCGGCGA CGAGCGTCGT CGACGGCGAC TGCCGCAGCT GGGACATCCC GAACCTGTGG GTCTGCGACG GGTCGGTGTT TCCGACCGTC GGCGGCGTGA ACCCGTCGCT GACGATCCAG GCGATCGCGT GCCGCACCGC CGATCGCATC CGCGCGCTCG TCGCGCGCGG CGACGCACAT GCGCGCGCAC GGTGGCGGTA G
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Protein sequence | MAADDALSAA RPRGRDGRAP DPLRVGGWSP MRMFRDDDPV DFVIVGTGAG GGTLACRLAE HGFSVVALDA GAWWRPLEEF ASDESHQHKL FWTDERLCDG ADPLTLGTNN SGRAVGGSTV HFAMVSLRFR PEWFRSRTAL GYGVDWPLDW REMWRYYREV EQALKISGPV SYPWGPPRPR YPYRAHELNA AALVLARGAE ALGIDWTPTP LATLSAPRGR AHPCVYRGFC ISGCATNAKQ SALVTWIPRA VAAGAEVRDL AMALRIEAAG DRVTGVHYRR DGRTRFQRAR NVVVAGYAIE TPRLLLLSAN GRHPQGLANS SGLVGRYLMA QLNQASWGTM DDEVRWYKGP PSLSLTEHWN YVDEGKDFFG GYCWMSQGPL PIEWARKIAA RGLWGDALKR EMARYNFQAG LKIVGETLPR AENRVTLADE RDAFGLPIAR VTYSYDDNDR RMMRHAFAQM ARSLEAAGAR DIWHEEDDTC HLAGTVRMGD DPATSVVDGD CRSWDIPNLW VCDGSVFPTV GGVNPSLTIQ AIACRTADRI RALVARGDAH ARARWR
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