| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6279 |
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| Symbol | |
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| ID | 6182720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 865425 |
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| End bp | 867095 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641689406 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_001816265 |
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| Protein GI | 172065553 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00998076 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCGCTG ACGACGCGTT GTCCGCCGCC AGGCCGCGTG GCCGGGATGG CCGCGCGCCC
GATCCGCTGC GCGTCGGCGG CTGGTCGCCG ATGCGGATGT TTCGCGACGA CGATCCGGTC
GACTTCGTGA TCGTCGGCAC CGGCGCCGGT GGCGGCACGC TCGCGTGCCG GCTCGCGGAG
CACGGCTTCT CGGTCGTCGC GCTCGACGCG GGCGCATGGT GGCGGCCGCT CGAGGAATTC
GCGTCCGACG AGTCGCACCA GCACAAGTTG TTCTGGACCG ACGAGCGGCT CTGCGACGGT
GCCGATCCGC TGACGCTCGG CACCAACAAC AGCGGCCGCG CGGTCGGCGG CAGCACCGTG
CATTTCGCGA TGGTGTCGCT GCGCTTTCGG CCCGAGTGGT TCCGCTCGCG CACGGCCCTG
GGCTACGGCG TCGACTGGCC GCTCGACTGG CGCGAGATGT GGCGCTACTA CCGCGAGGTC
GAGCAGGCGC TGAAGATCAG CGGGCCGGTG AGCTACCCGT GGGGGCCGCC GCGCCCGCGC
TATCCGTACC GAGCACATGA GCTGAACGCG GCCGCGCTCG TGCTCGCGCG CGGCGCCGAG
GCGCTCGGCA TCGACTGGAC GCCGACCCCG CTCGCGACGC TGTCCGCGCC GCGCGGTCGT
GCGCATCCGT GTGTGTATCG CGGCTTCTGC ATCAGCGGCT GCGCGACCAA TGCGAAGCAG
AGCGCACTCG TCACGTGGAT TCCGCGCGCG GTCGCGGCCG GCGCCGAGGT GCGCGATCTC
GCGATGGCGC TGCGGATCGA GGCCGCGGGC GATCGCGTGA CGGGCGTGCA TTACCGGCGC
GACGGCCGCA CGCGTTTCCA GCGTGCGCGC AATGTCGTCG TCGCCGGCTA CGCGATCGAG
ACGCCGCGCT TGCTGCTGCT GTCCGCGAAC GGACGCCATC CGCAGGGGCT CGCGAACAGC
TCGGGCCTCG TCGGCCGCTA CCTGATGGCG CAACTGAACC AGGCGTCGTG GGGGACGATG
GACGACGAGG TGCGCTGGTA CAAAGGGCCG CCGTCGCTGT CGCTCACCGA GCACTGGAAC
TACGTGGACG AAGGCAAGGA CTTCTTCGGA GGCTACTGCT GGATGAGCCA GGGGCCGTTG
CCGATCGAAT GGGCGCGGAA GATCGCCGCG CGCGGGCTGT GGGGCGACGC GCTGAAGCGC
GAGATGGCGC GCTACAACTT CCAGGCCGGC CTGAAGATCG TCGGCGAGAC GCTGCCGCGC
GCGGAAAACC GCGTGACGCT CGCCGACGAG CGCGACGCGT TCGGGCTGCC GATCGCGCGC
GTCACCTATT CATACGACGA CAACGACCGC CGGATGATGC GCCATGCGTT CGCGCAGATG
GCGCGCTCGC TCGAAGCCGC CGGCGCGCGC GACATCTGGC ACGAAGAAGA CGACACCTGC
CATCTCGCGG GCACCGTGCG GATGGGCGAC GACCCGGCGA CGAGCGTCGT CGACGGCGAC
TGCCGCAGCT GGGACATCCC GAACCTGTGG GTCTGCGACG GGTCGGTGTT TCCGACCGTC
GGCGGCGTGA ACCCGTCGCT GACGATCCAG GCGATCGCGT GCCGCACCGC CGATCGCATC
CGCGCGCTCG TCGCGCGCGG CGACGCACAT GCGCGCGCAC GGTGGCGGTA G
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| Protein sequence | MAADDALSAA RPRGRDGRAP DPLRVGGWSP MRMFRDDDPV DFVIVGTGAG GGTLACRLAE
HGFSVVALDA GAWWRPLEEF ASDESHQHKL FWTDERLCDG ADPLTLGTNN SGRAVGGSTV
HFAMVSLRFR PEWFRSRTAL GYGVDWPLDW REMWRYYREV EQALKISGPV SYPWGPPRPR
YPYRAHELNA AALVLARGAE ALGIDWTPTP LATLSAPRGR AHPCVYRGFC ISGCATNAKQ
SALVTWIPRA VAAGAEVRDL AMALRIEAAG DRVTGVHYRR DGRTRFQRAR NVVVAGYAIE
TPRLLLLSAN GRHPQGLANS SGLVGRYLMA QLNQASWGTM DDEVRWYKGP PSLSLTEHWN
YVDEGKDFFG GYCWMSQGPL PIEWARKIAA RGLWGDALKR EMARYNFQAG LKIVGETLPR
AENRVTLADE RDAFGLPIAR VTYSYDDNDR RMMRHAFAQM ARSLEAAGAR DIWHEEDDTC
HLAGTVRMGD DPATSVVDGD CRSWDIPNLW VCDGSVFPTV GGVNPSLTIQ AIACRTADRI
RALVARGDAH ARARWR
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