| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6273 |
|---|
| Symbol | |
|---|
| ID | 6182714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 859354 |
|---|
| End bp | 860958 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641689400 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001816259 |
|---|
| Protein GI | 172065547 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.146254 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGGC CGCCCGACAA GCCGCCCAAC GGGTCCTCTT CGGCCGGCGG CGCGTGGCGG
CCCGCCGCGA ACCCGTGGGT CATCGCGATC GTCGTCACGC TCGCCGCGTT CATGGAGGTG
CTCGACACGA CGATCGTCAA CGTCGCGCTG CCGCATATCG CCGGGACGAT GTCCGCGAGC
TACGACGAGG CGACCTGGAC GCTCACGTCG TACCTCGTCG CGAACGGCAT CGTGCTGCCG
ATTTCCGGCT TCCTCGGGCG CCTGCTCGGC CGCAAGCGCT ACTTCCTGAT GTGCATCGCC
GCGTTCACCG TGTGCTCGTT CCTGTGCGGC GTCGCGACCA ACCTGGGCGA GCTGATCGTG
TTCCGCGTGC TGCAGGGGCT GTTCGGTGGC GGACTGCAGC CGAACCAGCA GTCGATCATC
CTCGACACGT TTCCGCCCGA ACAGCGCAAC CGCGCGTTCT CCATCTCGGC GATCGCGATC
GTCGTCGCGC CGGTGCTCGG GCCCACGCTC GGCGGCTGGA TCACAGATCA TTTCTCGTGG
CGCTGGGTGT TCCTGCTCAA CGTGCCGATC GGCGCGCTGA CCGTGCTCGC GGTGATGCAG
CTCGTCGAGG ATCCGCCGTG GCGACGCGGC GCCGAGCGCG GGATCTCGGT CGACTACATC
GGCATCGGGC TGATCGCGAT CGGCCTCGGC TGCCTGCAGG TGATGCTCGA TCGCGGCGAG
GACGAGGACT GGTTCGGATC GAACTTCATC CGAGTCTTTG CGGTGCTGTC GGCGCTCGGC
CTGATCGGCG CGACGCTGTG GCTGCTGCGC GTGAAGAAGC CGGTGGTCGA CCTGTCGTGC
CTGCGCGATC GAAACTTCGC GCTCGGCTGC GTGACCATCG CGACGTTCGC GGCCGTGCTG
TACGGCAGCG CGGTGATCGT CCCGCAACTC GCGCAGCAGC ACCTCGGCTA TACGGCGACG
CTCGCGGGGC TCGTGCTGTC GCCCGGCGCG CTGCTGATCA CGCTGGAAAT CCCGCTCGTG
AGCCGGCTGA TGCCGCACGT GCAGACGCGC TACCTGGTCG GCTTCGGTTT CGTGCTGCTG
TCGGTCGCGC TGGTCTATTC GCGGCTGCTG GTGCCGGACA TCGACTACCG GCACCTGGTG
ATGATCCGCT GCGCGCAGTC GCTCGCGATC GGCTTCATGT TCGTGCCGAT CACGACGCTC
GCTTACCTGA CCGTGCCGCA GCGGCTCAAC GACGATGCAT CCGCGCTGTT CACGATGTTC
CGCAACGTCG CGGGCTCGAT CGGCATCTCG GTGTCGACCG CGCTGATCCG CGAGCGGACG
CAGGCGCGCA TGGCGCACCT GTCCACGCAC ATGTCGCCGC TGTCGCAGAA CTTTCAGGAC
GCGCTGCACG AGAACGCGCG CGCGATCGGC GCGCTGTCGG GCGTGCCGCC GCCGGCCGCG
CTGCAAACCG CGACCGGCCG GCTGTACGAG ACGTTCATCT CGCAGGCGAC GATCCTCGCG
TATATGGACG TGTTCGCGAT TCTCGCGGTG TTCTGCGCGT TCAGCATTCC GCTGACGTTC
CTGTTCTCGC CGGTGAAGGC CGCACGCGGC GCGGGAGGGC ATTGA
|
|---|
| Protein sequence | MNRPPDKPPN GSSSAGGAWR PAANPWVIAI VVTLAAFMEV LDTTIVNVAL PHIAGTMSAS
YDEATWTLTS YLVANGIVLP ISGFLGRLLG RKRYFLMCIA AFTVCSFLCG VATNLGELIV
FRVLQGLFGG GLQPNQQSII LDTFPPEQRN RAFSISAIAI VVAPVLGPTL GGWITDHFSW
RWVFLLNVPI GALTVLAVMQ LVEDPPWRRG AERGISVDYI GIGLIAIGLG CLQVMLDRGE
DEDWFGSNFI RVFAVLSALG LIGATLWLLR VKKPVVDLSC LRDRNFALGC VTIATFAAVL
YGSAVIVPQL AQQHLGYTAT LAGLVLSPGA LLITLEIPLV SRLMPHVQTR YLVGFGFVLL
SVALVYSRLL VPDIDYRHLV MIRCAQSLAI GFMFVPITTL AYLTVPQRLN DDASALFTMF
RNVAGSIGIS VSTALIRERT QARMAHLSTH MSPLSQNFQD ALHENARAIG ALSGVPPPAA
LQTATGRLYE TFISQATILA YMDVFAILAV FCAFSIPLTF LFSPVKAARG AGGH
|
|---|
| |