Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6272 |
Symbol | |
ID | 6182713 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | - |
Start bp | 857675 |
End bp | 859351 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641689399 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001816258 |
Protein GI | 172065546 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.397121 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGATGA ATCGACAGCG CGGCAGCCGC CGGCATGCGC TGCAACCGCG CGGCCTCGCC GCGATGCTGG CGGCCTGCTT GGCGATCACT GGCTGTACCG TCGGACCGGA TTTCAAGCCG CCGCATGCGG ATGTGCCGGC CAACTGGCAT GACCTGCAGG CGTCGGCTGC GGCCGCATCG CCCGCATCGG CCGCCGGCGC GCATGCGCCG TCGTCGCCGA CGACCCGCGC CGATCCCGAC CCGCGCTGGT GGCGCGCGTT CGGCGATCCG CTGCTCGATC GCCTCGTCGA GCGTGCCGCG CGCGACAACC TCGACGTGCA GGCGGCCGTG CTGCGCATCG CGCAGGCGCG TGCGCAGGTG CGCGCGGCCG CTGCGCAGGG CTTGCCGAAC GTGCGGGCGA ACGCGAGCTA CCAGCGCGAG CAGTTGGGCC TCAAAGGAAT CATCGAGGAA CAGGGCATCG ACCAGCGCGT CGATCGTCTC GGCGCGCCGG GTTCGCCGCT CGACCGCTTC GGACCGGGCA CCGGCGCGAG CGTGCAGCAG GGCGCGCACG CGGCGATCGA TTCGCTCGAA GCGCCGGTCA ATGTGTGGCA GGCCGGGTTC GACGCATCAT GGGAACTCGA CCTGTTCGGG CGCGTGCGTC GCTCGGTCGA AGCGGCCGGC GCGCAGGCGA GCGCCGCGGT CGCGAGTCGC GACGATGCGC TGCTGTCGCT GCAGGCCGAA GTCGCGCAGA CCTATCTGCA ACTGCGCGGC GCCGAAGCGC AACGCGCGCT GGCCGACGAC CTGCAACGCG CACAGCGCGA CCTGCTGGAT CTCACGCGCG AGCAGGCCGC GCACGGTCTC GCGAGCGACC TCGACGTGCG CAGCGCCGAT GCGCGGCTCG CGCAGATTCG CGCGCAGCTG CCGCAGTTCG ACCAGCAGAT CGTGCTGCTG CGCAACGGCC TCGCGTATCT GGTCGGCGGC GCCCCGGGCG CGCTCGACGA CTGGCTCGAC GCGCCGCGCG CGTTGCCGGG CGTGCCGCCC ACCGTGCCGG TCGGGCTGCC GTCGACGCTG GCGCGCCGGC GGCCCGACAT CCGCCGCGCG GAGGCCGAGC TGCATGCGGC GACCGCCGAC GTCGGCGTCG CGGTCGCGCA GTTCTATCCG GATATCTCGC TGACCGGGCA GGTCGGGTTG CGCGCGGCGC ACGTGCGCGA GCTCGCGCAC TGGTCGCATC TGTTCTACTC GTTCGGGCCG GCCGTGTCGT TGCCGATCTT TTCGGGCGGG CAACTCGTAT CGAACCTGCG GCTGTCGCAG GCACGCCAGG CCGAAGCGGC GCTCGCCTAT CGAAGGGCCG TGCTCGTCGC GCTGCGCGAC GTCGACAACG CGCTGGCCGT CTACCGCACC GACCAGGCAC GCGCGGCCGC GCTCGACGAT GCGGTCAAGG CCGAGCAGGG CGCGCTGGAG CTCGCGCGCG ATCGTTACCG GAAGGGGTTG TCGCCGTTCC TCGACGTGCT CGACGCCGAG CGGCAATGGT CGGAGGGGCG ACAGCAGGCG GTGCAGGGCG CGTTGCAGAC GACGACCGAT CTCGTCGCGC TGTACAAGGC GCTGGGCGGC GGATGGCAGA CGACCGGGCC GGCCGCGGAG GCGGCTACGG TCGGCGCGGT GCCGCCGTCA CGAGCCGATA TGGCTCGCGT GCAATAG
|
Protein sequence | MTMNRQRGSR RHALQPRGLA AMLAACLAIT GCTVGPDFKP PHADVPANWH DLQASAAAAS PASAAGAHAP SSPTTRADPD PRWWRAFGDP LLDRLVERAA RDNLDVQAAV LRIAQARAQV RAAAAQGLPN VRANASYQRE QLGLKGIIEE QGIDQRVDRL GAPGSPLDRF GPGTGASVQQ GAHAAIDSLE APVNVWQAGF DASWELDLFG RVRRSVEAAG AQASAAVASR DDALLSLQAE VAQTYLQLRG AEAQRALADD LQRAQRDLLD LTREQAAHGL ASDLDVRSAD ARLAQIRAQL PQFDQQIVLL RNGLAYLVGG APGALDDWLD APRALPGVPP TVPVGLPSTL ARRRPDIRRA EAELHAATAD VGVAVAQFYP DISLTGQVGL RAAHVRELAH WSHLFYSFGP AVSLPIFSGG QLVSNLRLSQ ARQAEAALAY RRAVLVALRD VDNALAVYRT DQARAAALDD AVKAEQGALE LARDRYRKGL SPFLDVLDAE RQWSEGRQQA VQGALQTTTD LVALYKALGG GWQTTGPAAE AATVGAVPPS RADMARVQ
|
| |