Gene BamMC406_6272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6272 
Symbol 
ID6182713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp857675 
End bp859351 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content73% 
IMG OID641689399 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_001816258 
Protein GI172065546 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.397121 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATGA ATCGACAGCG CGGCAGCCGC CGGCATGCGC TGCAACCGCG CGGCCTCGCC 
GCGATGCTGG CGGCCTGCTT GGCGATCACT GGCTGTACCG TCGGACCGGA TTTCAAGCCG
CCGCATGCGG ATGTGCCGGC CAACTGGCAT GACCTGCAGG CGTCGGCTGC GGCCGCATCG
CCCGCATCGG CCGCCGGCGC GCATGCGCCG TCGTCGCCGA CGACCCGCGC CGATCCCGAC
CCGCGCTGGT GGCGCGCGTT CGGCGATCCG CTGCTCGATC GCCTCGTCGA GCGTGCCGCG
CGCGACAACC TCGACGTGCA GGCGGCCGTG CTGCGCATCG CGCAGGCGCG TGCGCAGGTG
CGCGCGGCCG CTGCGCAGGG CTTGCCGAAC GTGCGGGCGA ACGCGAGCTA CCAGCGCGAG
CAGTTGGGCC TCAAAGGAAT CATCGAGGAA CAGGGCATCG ACCAGCGCGT CGATCGTCTC
GGCGCGCCGG GTTCGCCGCT CGACCGCTTC GGACCGGGCA CCGGCGCGAG CGTGCAGCAG
GGCGCGCACG CGGCGATCGA TTCGCTCGAA GCGCCGGTCA ATGTGTGGCA GGCCGGGTTC
GACGCATCAT GGGAACTCGA CCTGTTCGGG CGCGTGCGTC GCTCGGTCGA AGCGGCCGGC
GCGCAGGCGA GCGCCGCGGT CGCGAGTCGC GACGATGCGC TGCTGTCGCT GCAGGCCGAA
GTCGCGCAGA CCTATCTGCA ACTGCGCGGC GCCGAAGCGC AACGCGCGCT GGCCGACGAC
CTGCAACGCG CACAGCGCGA CCTGCTGGAT CTCACGCGCG AGCAGGCCGC GCACGGTCTC
GCGAGCGACC TCGACGTGCG CAGCGCCGAT GCGCGGCTCG CGCAGATTCG CGCGCAGCTG
CCGCAGTTCG ACCAGCAGAT CGTGCTGCTG CGCAACGGCC TCGCGTATCT GGTCGGCGGC
GCCCCGGGCG CGCTCGACGA CTGGCTCGAC GCGCCGCGCG CGTTGCCGGG CGTGCCGCCC
ACCGTGCCGG TCGGGCTGCC GTCGACGCTG GCGCGCCGGC GGCCCGACAT CCGCCGCGCG
GAGGCCGAGC TGCATGCGGC GACCGCCGAC GTCGGCGTCG CGGTCGCGCA GTTCTATCCG
GATATCTCGC TGACCGGGCA GGTCGGGTTG CGCGCGGCGC ACGTGCGCGA GCTCGCGCAC
TGGTCGCATC TGTTCTACTC GTTCGGGCCG GCCGTGTCGT TGCCGATCTT TTCGGGCGGG
CAACTCGTAT CGAACCTGCG GCTGTCGCAG GCACGCCAGG CCGAAGCGGC GCTCGCCTAT
CGAAGGGCCG TGCTCGTCGC GCTGCGCGAC GTCGACAACG CGCTGGCCGT CTACCGCACC
GACCAGGCAC GCGCGGCCGC GCTCGACGAT GCGGTCAAGG CCGAGCAGGG CGCGCTGGAG
CTCGCGCGCG ATCGTTACCG GAAGGGGTTG TCGCCGTTCC TCGACGTGCT CGACGCCGAG
CGGCAATGGT CGGAGGGGCG ACAGCAGGCG GTGCAGGGCG CGTTGCAGAC GACGACCGAT
CTCGTCGCGC TGTACAAGGC GCTGGGCGGC GGATGGCAGA CGACCGGGCC GGCCGCGGAG
GCGGCTACGG TCGGCGCGGT GCCGCCGTCA CGAGCCGATA TGGCTCGCGT GCAATAG
 
Protein sequence
MTMNRQRGSR RHALQPRGLA AMLAACLAIT GCTVGPDFKP PHADVPANWH DLQASAAAAS 
PASAAGAHAP SSPTTRADPD PRWWRAFGDP LLDRLVERAA RDNLDVQAAV LRIAQARAQV
RAAAAQGLPN VRANASYQRE QLGLKGIIEE QGIDQRVDRL GAPGSPLDRF GPGTGASVQQ
GAHAAIDSLE APVNVWQAGF DASWELDLFG RVRRSVEAAG AQASAAVASR DDALLSLQAE
VAQTYLQLRG AEAQRALADD LQRAQRDLLD LTREQAAHGL ASDLDVRSAD ARLAQIRAQL
PQFDQQIVLL RNGLAYLVGG APGALDDWLD APRALPGVPP TVPVGLPSTL ARRRPDIRRA
EAELHAATAD VGVAVAQFYP DISLTGQVGL RAAHVRELAH WSHLFYSFGP AVSLPIFSGG
QLVSNLRLSQ ARQAEAALAY RRAVLVALRD VDNALAVYRT DQARAAALDD AVKAEQGALE
LARDRYRKGL SPFLDVLDAE RQWSEGRQQA VQGALQTTTD LVALYKALGG GWQTTGPAAE
AATVGAVPPS RADMARVQ