| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6261 |
|---|
| Symbol | |
|---|
| ID | 6182816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 849707 |
|---|
| End bp | 851233 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641689388 |
|---|
| Product | amidase |
|---|
| Protein accession | YP_001816247 |
|---|
| Protein GI | 172065535 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.610703 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATCA AACGCCCGAC CCGCGAACAA CTTTCCGACA TCGCAGCCGG CTTCGGCTTT
CATGTCGATG CCCGGCAGCT CGCCGATTAC GACGACGCGC TGCAGGCGAA TTTCGACGCG
TACGACGCGA TCGACGCGCT GCCCGACTAT CTGCCGACCA TCGCGTATCC GCGCACGCCG
GGCTACCGCC CGGAAGGCGA CGAAAACCGT TATGGCGCGT GGGCGCGCAA GAGCACGATC
CACGGCGCCG CCGACGGCAA GCTGCGCGGC AAGACCATGG CCGTGAAAGA CAACATCTGC
GTCGGCGGCG TGCCGATGCG CAACGGCGCG AGCACGTTCG AAGGTTACGT GCCCGACGTC
GACGCGACTG TCGTCACGCG GATGCTCGAC GCCGGCGCGA CAATCGCCGG CAAGTCGACC
TGCGAGTACT ACTGTTTTTC CGGCGGCTCG CATACGAGCG CGTCCGGGCC CGTGCTCAAT
CCGCGCAAGG CCGGACATTC GGCCGGCGGT TCGTCGTCCG GCAGCGGTGC GCTGATCGCG
AGCGGCGAAG TCGACATGGC GCTCGGCAGC GACCAGGGCG GCTCGGTGCG GATTCCGTCC
GCGTATTGCG GTGTCTACGG AATGAAGCCG ACGCACGGCC TGGTCCCGTA TACCGGCGCA
ATGCCAATCG AGGCGACCGT CGATCACCTC GGGCCGATGA CGGGCAACGT GCTCGACAAC
GCGCTGCTGC TCGACGTGAT CGCCGGTGAC GACGGGGTCG ACCCGCGCCA GCGGGCGCTG
CCGCCGCGCG CCGACTATCT CGGTGCGATC CGGGACGGCA TAGCCGGCCT GCGGATCGGC
ATCCTGCGCG AAGGGTTTGG ACTCGCGAAT TCGGAGGCGG TCGTCGACGA GGCCGTGCTC
GTCGCCGCGC ACCGGTTGCG CCAGCTTGGC GCGAAGGTCG ACGAGGTATC GGTGCCGTTG
CATGCGACCG GAACGGCGAT CTGGCTGCCG ATTGCCGCCG AAGGCGCGAC TCAGCAGATG
ATGAAGGGCA ACAGCCACGG CTTCAACTGG GGCGGCCTGT ACGTGACGGG CATGATCGAT
CATCACGCGG GCTGGCGCGA GCGTGCCGAC GAGCTGCCGG ATACCGTCAA GGTGACGATG
CTGCTCGGAG AATATTTCAC GAGCCGGTAT CGCGGCCGCT ATTACGCGAA GTGCCAGAAC
CTCGCACGGC GGCTGCGGGC GGATTACGAC ACGGCCCTGC AATCGTATGA TCTTTTGTTG
ATGCCGACCG TGCCGATACG CGCGTCGAAA CTGCCGGAGC CCGGTTGCCC GATGTCCGAA
TCGCTGACGC GCGCGTTCGA GATGCTCGCG AATACGGCAC CGTTCGACGT ATCCGGACAT
CCGGCAATGT CGCTTCCCTG CGGGATCGCG GAAGATCTAC CGATCGGGCT GCAACTGGTC
GGGCGTCGCT TCGACGAGGC GACGATCTAC CGGTGCGCCT ATGCGTATGA ACAGTCGTCC
GACTGGCGCC AGACGACGTT CGCATAA
|
|---|
| Protein sequence | MAIKRPTREQ LSDIAAGFGF HVDARQLADY DDALQANFDA YDAIDALPDY LPTIAYPRTP
GYRPEGDENR YGAWARKSTI HGAADGKLRG KTMAVKDNIC VGGVPMRNGA STFEGYVPDV
DATVVTRMLD AGATIAGKST CEYYCFSGGS HTSASGPVLN PRKAGHSAGG SSSGSGALIA
SGEVDMALGS DQGGSVRIPS AYCGVYGMKP THGLVPYTGA MPIEATVDHL GPMTGNVLDN
ALLLDVIAGD DGVDPRQRAL PPRADYLGAI RDGIAGLRIG ILREGFGLAN SEAVVDEAVL
VAAHRLRQLG AKVDEVSVPL HATGTAIWLP IAAEGATQQM MKGNSHGFNW GGLYVTGMID
HHAGWRERAD ELPDTVKVTM LLGEYFTSRY RGRYYAKCQN LARRLRADYD TALQSYDLLL
MPTVPIRASK LPEPGCPMSE SLTRAFEMLA NTAPFDVSGH PAMSLPCGIA EDLPIGLQLV
GRRFDEATIY RCAYAYEQSS DWRQTTFA
|
|---|
| |